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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG614
Library VS
(Link to library)
Clone ID VSG614
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG614F
(Link to Original site)
Representative DNA sequence 
>VSG614 (VSG614Q) /CSM/VS/VSG6-A/VSG614Q.Seq.d/
GTTCTAGATCGCGAGCGGCCCCCTTTTTTTTTTTTTTTTTTNAAAAAATTTNTTTAXXXX
XXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
VLDRERPPFFFFFXKKFX---
Translated Amino Acid sequence (All Frames) 
Frame A:
VLDRERPPFFFFFXKKFX---


Frame B:
f*iasgplfffffxknxf---


Frame C:
srsraapffffffxkix---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG614 (VSG614Q) /CSM/VS/VSG6-A/VSG614Q.Seq.d/                         46   5e-05
SSH494 (SSH494Q) /CSM/SS/SSH4-D/SSH494Q.Seq.d/                         46   5e-05
SSL209 (SSL209Q) /CSM/SS/SSL2-A/SSL209Q.Seq.d/                         44   2e-04
VSJ833 (VSJ833Q) /CSM/VS/VSJ8-B/VSJ833Q.Seq.d/                         40   0.003
VSJ150 (VSJ150Q) /CSM/VS/VSJ1-C/VSJ150Q.Seq.d/                         40   0.003
SSM380 (SSM380Q) /CSM/SS/SSM3-D/SSM380Q.Seq.d/                         40   0.003
SSM332 (SSM332Q) /CSM/SS/SSM3-B/SSM332Q.Seq.d/                         40   0.003
SSM158 (SSM158Q) /CSM/SS/SSM1-C/SSM158Q.Seq.d/                         40   0.003
SSL895 (SSL895Q) /CSM/SS/SSL8-D/SSL895Q.Seq.d/                         40   0.003
SSL525 (SSL525Q) /CSM/SS/SSL5-B/SSL525Q.Seq.d/                         40   0.003
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BF160350|BF160350.1 601768621F1 NCI_CGAP_Lu29 Mus musculus cDNA clone IMAGE:3987941 5', mRNA sequence.    46  0.039  1
AU033080|AU033080.1 Oryza sativa cDNA, partial sequence (S2625_1Z).    46  0.039  1
BG288501|BG288501.1 602383556F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE:4501116 5', mRNA sequence.    46  0.039  1
BQ832770|BQ832770.1 LL6in11877T7 AFT024-subtracted library Mus musculus cDNA 5', mRNA sequence.    46  0.039  1
BI694546|BI694546.1 603348346F1 NCI_CGAP_Mam2 Mus musculus cDNA clone IMAGE:5376130 5', mRNA sequence.    46  0.039  1
BX457312|BX457312.1 human full-length cDNA 5-PRIME end of clone CS0CAP007YJ07 of THYMUS  of Homo sapiens (human).    46  0.039  1
BQ723431|BQ723431.1 AGENCOURT_8295378 Lupski_sympathetic_trunk Homo sapiens cDNA clone IMAGE:6188858 5', mRNA sequence.    46  0.039  1
BQ420546|BQ420546.1 AGENCOURT_7761239 NIH_MGC_70 Homo sapiens cDNA clone IMAGE:6019968 5', mRNA sequence.    46  0.039  1
CB017522|CB017522.1 pgn1c.pk016.i10 Chicken lymphoid cDNA library (pgn1c) Gallus gallus cDNA clone pgn1c.pk016.i10 5' similar to no significant hits (pLog(P) 4), mRNA sequence.    46  0.039  1
BM029513|BM029513.1 IpSkn01547 Skin cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    46  0.039  1
dna update 2003. 8.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 29,099,352
protein update 2009. 3.23
PSORT -
5' end seq. ID VSG614F
5' end seq. 
>VSG614F.Seq
GTTCTAGATCGCGAGCGGCCCCCTTTTTTTTTTTTTTTTTTNAAAAAATTTNTTTA----
------
Length of 5' end seq. 56
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -