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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG589
Library VS
(Link to library)
Clone ID VSG589
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG589F
(Link to Original site)
Representative DNA sequence 
>VSG589 (VSG589Q) /CSM/VS/VSG5-D/VSG589Q.Seq.d/
AAAAATCAAGTCGTCAACTAAACCACAAAATAGAAAAAAAAAAATTGGAAAAAAAAAAXX
XXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
KIKSSTKPQNRKKKIGKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
knqvvn*ttk*kkknwkkk---


Frame B:
KIKSSTKPQNRKKKIGKK---


Frame C:
kssrqlnhkiekkklekk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG589 (VSG589Q) /CSM/VS/VSG5-D/VSG589Q.Seq.d/                         66   6e-11
SSI603 (SSI603Q) /CSM/SS/SSI6-A/SSI603Q.Seq.d/                         66   6e-11
FC-BE15 (FC-BE15Q) /CSM/FC/FC-BE/FC-BE15Q.Seq.d/                       58   1e-08
CHO614 (CHO614Q) /CSM/CH/CHO6-A/CHO614Q.Seq.d/                         30   3.3
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC023526|AC023526.2 Homo sapiens clone RP11-587F19, WORKING DRAFT SEQUENCE, 52 unordered pieces.    40  2.5  1
AC093258|AC093258.2 Homo sapiens chromosome 5 clone RP11-1E3, complete sequence.    40  2.5  1
AQ279748|AQ279748.1 CITBI-E1-2513D2.TF CITBI-E1 Homo sapiens genomic clone 2513D2, DNA sequence.    40  2.5  1
dna update 2002. 5.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.307    0.121    0.289

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 32,313,207
protein update 2009. 3.23
PSORT -
5' end seq. ID VSG589F
5' end seq. 
>VSG589F.Seq
AAAAATCAAGTCGTCAACTAAACCACAAAATAGAAAAAAAAAAATTGGAAAAAAAAAA--
--------
Length of 5' end seq. 58
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -