VSG588
Library VS
(Link to library)
Clone ID VSG588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03807-1
Original site URL
Representative seq. ID VSG588F
(Link to Original site)
Representative DNA sequence
>VSG588 (VSG588Q) /CSM/VS/VSG5-D/VSG588Q.Seq.d/
AAACAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAACTCAAA
AACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGTGCTATC
GCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTTTTCAAA
GTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTCCCAACT
TTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAAGTAGCC
CTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGTAAAAAAAA
AAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
KQNKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITFFK
VDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMVKKLL*innl*nl*kk
---


Translated Amino Acid sequence (All Frames)
Frame A:
KQNKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITFFK
VDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMVKKLL*innl*nl*kk
---


Frame B:
nktkctknqktrvntklnsktlqsllfisllpgvahvvlspqfsptfqmhqktakslfsk
lmlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkiwsknsyk*iiyrickkk
---


Frame C:
tkqnvqrtkkre*irs*tqkrssrcclshcylvwpmscyrpsfhqhfkctrkqqnhffqs
*c*cp*kitsl*itprcpnfhclqkw*rtrkilwcq*ssp*kygqktlink*siefvkk-
--


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ701 (VSJ701Q) /CSM/VS/VSJ7-A/VSJ701Q.Seq.d/ 698 0.0
VSJ526 (VSJ526Q) /CSM/VS/VSJ5-B/VSJ526Q.Seq.d/ 698 0.0
VSG588 (VSG588Q) /CSM/VS/VSG5-D/VSG588Q.Seq.d/ 698 0.0
VFG868 (VFG868Q) /CSM/VF/VFG8-C/VFG868Q.Seq.d/ 698 0.0
VSF416 (VSF416Q) /CSM/VS/VSF4-A/VSF416Q.Seq.d/ 694 0.0
VSF262 (VSF262Q) /CSM/VS/VSF2-C/VSF262Q.Seq.d/ 692 0.0
VSA165 (VSA165Q) /CSM/VS/VSA1-C/VSA165Q.Seq.d/ 682 0.0
VSB571 (VSB571Q) /CSM/VS/VSB5-C/VSB571Q.Seq.d/ 678 0.0
VSC387 (VSC387Q) /CSM/VS/VSC3-D/VSC387Q.Seq.d/ 670 0.0
VSA173 (VSA173Q) /CSM/VS/VSA1-D/VSA173Q.Seq.d/ 666 0.0

own update 2001.11.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BQ507669|BQ507669.2 EST615084 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 3' end, mRNA sequence. 32 0.078 3
BG598337|BG598337.1 EST497015 cSTS Solanum tuberosum cDNA clone cSTS20D12 5' sequence, mRNA sequence. 32 0.079 3
BQ507668|BQ507668.1 EST615083 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 5' end, mRNA sequence. 32 0.083 3
AC096242|AC096242.7 Rattus norvegicus clone CH230-34A11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 48 0.17 7
AC016553|AC016553.6 Homo sapiens chromosome 5 clone CTC-305H11, complete sequence. 46 0.30 1
AC022090|AC022090.4 Homo sapiens chromosome 5 clone CTB-133H15, WORKING DRAFT SEQUENCE, 22 ordered pieces. 46 0.30 1
AL732359|AL732359.21 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone XXyac-82D3. 46 0.30 1
AC139850|AC139850.1 Homo sapiens BAC clone RP13-25D5 from 2, complete sequence. 38 0.40 5
AC020979|AC020979.6 Homo sapiens chromosome 5 clone RP1_166C2, complete sequence. 46 0.89 2
AL365366|AL365366.20 Human DNA sequence from clone RP11-553N16 on chromosome 1. 44 1.2 4
dna update 2003. 8.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015... 85 8e-16
BT056618_1(BT056618|pid:none) Salmo salar clone ssal-evf-553-337... 83 3e-15
AY036906_1(AY036906|pid:none) Vitis labrusca Hsp70 interacting p... 82 4e-15
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050... 82 4e-15
BC049031_1(BC049031|pid:none) Danio rerio zgc:56493, mRNA (cDNA ... 82 5e-15
CR954217_167(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 79 5e-14
AB019230_10(AB019230|pid:none) Arabidopsis thaliana genomic DNA,... 79 5e-14
(Q9DGI3) RecName: Full=Thioredoxin; Short=Trx; &AF2936... 78 8e-14
BT009704_1(BT009704|pid:none) Arabidopsis thaliana At3g17880 gen... 78 1e-13
BT049711_1(BT049711|pid:none) Salmo salar clone ssal-evf-541-161... 77 1e-13
protein update 2009. 3.23
PSORT

psg: 0.38 gvh: 0.67 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for VSG588 is cyt

5' end seq. ID VSG588F
5' end seq.
>VSG588F.Seq
AAACAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAACTCAAA
AACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGTGCTATC
GCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTTTTCAAA
GTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTCCCAACT
TTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAAGTAGCC
CTTGAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGTAAAAAAAA
AA----------
Length of 5' end seq. 362
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -