>VSG567 (VSG567Q) /CSM/VS/VSG5-C/VSG567Q.Seq.d/
CAATCCTTATAAAATCTAAAACAACAAAATGGTCTCTCTTAAATTACAAAAGAGATTAGC
TGCCTCTATTCTCAAATGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAATTGCTGA
TGTTGCCATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTTTCATCAT
GCGTAAACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTGCCAAACG
TTTAGGTCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTCTCCCATC
CAAGATTCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAATACCGTGA
AGCCAAGAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAGGTAATGT
CTTCAAGAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAAAATTAAG
AGAAAAACTCATCCAAGATCAAGCTCAAGCCCGTAXXXXXXXXXX

npyki*NNKMVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIM
RKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYRE
AKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQAR---

Frame A:
qsl*nlkqqngls*itkeisclysqmrqr*sldrsk*nc*cchgqlkr*rp*thryrfhh
a*tsccplsftc*rtqrcqtfrssqrcw*qiryp*ssspiqdsldp*nqsfkktlkeip*
sqenr*tllqrvipqsqr*clqeqtyln*ihrqi*d*kikrkthprssssp---


Frame B:
npyki*NNKMVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIM
RKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYRE
AKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQAR---


Frame C:
ilikskttkwsllnykrd*lplfsnaakvefgsiqmkllmlpwptqeitsvdsslpvssc
vnqllstlvhvlenttlpnv*vvtevlvtd*vpvklvshprffgsvesef*eds*rntvk
prksintltesytskpkvmssrtnvp*lntssnlrlkn*eknsskiklkp---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK337 (VSK337Q) /CSM/VS/VSK3-B/VSK337Q.Seq.d/                       1021   0.0
VSJ481 (VSJ481Q) /CSM/VS/VSJ4-D/VSJ481Q.Seq.d/                       1021   0.0
VSI313 (VSI313Q) /CSM/VS/VSI3-A/VSI313Q.Seq.d/                       1021   0.0
VSI231 (VSI231Q) /CSM/VS/VSI2-B/VSI231Q.Seq.d/                       1021   0.0
VSG567 (VSG567Q) /CSM/VS/VSG5-C/VSG567Q.Seq.d/                       1021   0.0
VSG377 (VSG377Q) /CSM/VS/VSG3-D/VSG377Q.Seq.d/                       1021   0.0
VSD291 (VSD291Q) /CSM/VS/VSD2-D/VSD291Q.Seq.d/                       1021   0.0
VFM446 (VFM446Q) /CSM/VF/VFM4-B/VFM446Q.Seq.d/                       1021   0.0
VFM394 (VFM394Q) /CSM/VF/VFM3-D/VFM394Q.Seq.d/                       1021   0.0
VFK333 (VFK333Q) /CSM/VF/VFK3-B/VFK333Q.Seq.d/                       1021   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X15383|X15383.1 Dictyostelium discoideum vegetative specific V14 gene.   743  0.0  2
L27657|L27657.1 Dictyostelium discoideum ribosomal protein (rpl19) mRNA, complete cds.   967  0.0  1
CD450796|CD450796.1 USDA-FP_102775 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-38_C01 5', mRNA sequence.    44  2e-08  3
CB909744|CB909744.1 USDA-FP_101487 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-21_D06 5', mRNA sequence.    44  3e-08  3
CD450513|CD450513.1 USDA-FP_102476 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-34_C02 5', mRNA sequence.    44  4e-08  3
BQ914431|BQ914431.1 QHB10I15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB10I15, mRNA sequence.    50  5e-08  3
CD451515|CD451515.1 USDA-FP_103756 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-47_E09 5', mRNA sequence.    44  6e-06  2
CA795361|CA795361.1 Cac_BL_2400 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_BL_2400 5', mRNA sequence.    34  7e-06  4
CA794909|CA794909.1 Cac_BL_1960 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_BL_1960 5', mRNA sequence.    34  7e-06  4
BU024757|BU024757.1 QHF5P11.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHF5P11, mRNA sequence.    50  8e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF145429_1(EF145429|pid:none) Populus trichocarpa clone WS01124_...   195   5e-49
EF084901_1(EF084901|pid:none) Picea sitchensis clone WS0287_J15 ...   195   5e-49
BT051421_1(BT051421|pid:none) Medicago truncatula clone MTYF1_F2...   195   5e-49
EF084012_1(EF084012|pid:none) Picea sitchensis clone WS0274_P03 ...   195   5e-49
AC152751_25(AC152751|pid:none) Medicago truncatula clone mth2-18...   195   6e-49
FJ362591_1(FJ362591|pid:none) Vernicia fordii 60s ribosome prote...   194   1e-48
BC126715_1(BC126715|pid:none) Bos taurus cDNA clone MGC:155204 I...   194   1e-48
(Q9LUQ6) RecName: Full=60S ribosomal protein L19-2;  &AB022217_2...   193   2e-48
AY389581_1(AY389581|pid:none) Hyacinthus orientalis ribosomal pr...   193   2e-48
(P49693) RecName: Full=60S ribosomal protein L19-3;  &AF386993_1...   193   2e-48

 psg: 0.67  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSG567 is cyt

>VSG567F.Seq
CAATCCTTATAAAATCTAAAACAACAAAATGGTCTCTCTTAAATTACAAAAGAGATTAGC
TGCCTCTATTCTCAAATGCGGCAAAGGTAGAGTTTGGATCGATCCAAATGAAATTGCTGA
TGTTGCCATGGCCAACTCAAGAGATAACGTCCGTAGACTCATCGCTACCGGTTTCATCAT
GCGTAAACCAGTTGTTGTCCACTCTCGTTCACGTGCTAGAGAACACAACGCTGCCAAACG
TTTAGGTCGTCACAGAGGTGCTGGTAACAGATTAGGTACCCGTGAAGCTCGTCTCCCATC
CAAGATTCTTTGGATCCGTAGAATCAGAGTTTTAAGAAGACTCTTAAAGAAATACCGTGA
AGCCAAGAAAATCGATAAACACTCTTACAGAGAGTTATACCTCAAAGCCAAAGGTAATGT
CTTCAAGAACAAACGTACCTTAATTGAATACATCGTCAAATCTAAGACTGAAAAATTAAG
AGAAAAACTCATCCAAGATCAAGCTCAAGCCCGTA----------