>VSG560 (VSG560Q) /CSM/VS/VSG5-C/VSG560Q.Seq.d/
CCCCGCGTCCGGGAAGAATATCATTTAAAGTGTATTGTAACAGGACCACCATTTGTTGGA
AAATCATCATTATTATTACAATTTTGTGAAAAAGAATTTTCATTTGAAATGGATACAACT
ATTGGTGTTGAATTTCAAACTAGAAGTATTTTAATTGATTCCAGTAAAATTAAATTGGAA
ATCTGGGATACAGCAGGTCAAGAATCATTTAGATCAATTACAACAAATTATTATAGAGGT
GCACATATTGCATTATTATGTTATGATATTACAAAACGTCAATCATTTCAATATTTAAGT
GGATGGATGGATGAAGTTAGACAAATGTCAAGTCCAAATATAGTAATAGCATTAATTGGT
AATAAATGTGATTGTAAAGATAAAAGAGTGATTACAACAGAGGAAGGAGCAAAATTTGCA
AAGGAAAACGATATCCTATTTTTTGAAACCTCTGCAAAAGATTATGAAAGTGTAGAAXXX
XXXXXXX

PRVREEYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLE
IWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIG
NKCDCKDKRVITTEEGAKFAKENDILFFETSAKDYESV---

Frame A:
PRVREEYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLE
IWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIG
NKCDCKDKRVITTEEGAKFAKENDILFFETSAKDYESV---


Frame B:
pasgknii*svl*qdhhllenhhyyynfvkknfhlkwiqllvlnfklevf*lipvklnwk
sgiqqvknhldqlqqiiievhilhyyvmilqnvnhfni*vdgwmkldkcqvqi***h*lv
invivkike*lqqrkeqnlqrktisyflkplqkimkv*---


Frame C:
prpgrisfkvycnrtticwkiiiiitil*krifi*ngynywc*isn*kyfn*fq*n*ign
lgysrsrii*inynkll*rctyciiml*yyktsiisifkwmdg*s*tnvkskysnsinw*
*m*l*r*ksdynrgrskickgkrypif*nlckrl*kcr---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG560 (VSG560Q) /CSM/VS/VSG5-C/VSG560Q.Seq.d/                        946   0.0
SSF883 (SSF883Q) /CSM/SS/SSF8-D/SSF883Q.Seq.d/                         70   3e-11
VSK285 (VSK285Q) /CSM/VS/VSK2-D/VSK285Q.Seq.d/                         66   5e-10
SSI654 (SSI654Q) /CSM/SS/SSI6-C/SSI654Q.Seq.d/                         64   2e-09
VSD572 (VSD572Q) /CSM/VS/VSD5-C/VSD572Q.Seq.d/                         56   5e-07
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/                         56   5e-07
VFJ330 (VFJ330Q) /CSM/VF/VFJ3-B/VFJ330Q.Seq.d/                         56   5e-07
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/                         56   5e-07
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/                         56   5e-07
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/                         56   5e-07

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI978723|BI978723.1 wE05 Old Blush petal SMART library Rosa chinensis cDNA 5', mRNA sequence.    48  3e-12  4
BI978178|BI978178.1 qD10 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to Rab2-like protein, mRNA sequence.    48  3e-12  4
BI978179|BI978179.1 qD11 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to guanine nucleotide regulatory protein (rab2), mRNA sequence.    48  3e-12  4
BF050362|BF050362.1 EST435520 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM17D15 5' sequence, mRNA sequence.    58  5e-10  4
AW649845|AW649845.1 EST328299 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI9F10 5', mRNA sequence.    58  1e-09  4
BM409219|BM409219.1 EST583546 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG47N1 5' end, mRNA sequence.    58  2e-09  4
BM411274|BM411274.1 EST585601 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG56A16 5' end, mRNA sequence.    58  2e-09  4
BI978378|BI978378.1 sF09 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to guanine nucleotide regulatory protein, mRNA sequence.    48  4e-09  4
U02926|U02926.1 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds.    70  9e-09  2
BM535579|BM535579.1 EST588601 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG67I10 5' end, mRNA sequence.    58  1e-08  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55ET3) RecName: Full=Ras-related protein RabQ;                      312   2e-84
AJ308736_1(AJ308736|pid:none) Plasmodium falciparum mRNA for put...   178   5e-44
(Q39570) RecName: Full=GTP-binding protein YPTC4;  &JC4106(JC410...   177   8e-44
EU365390_1(EU365390|pid:none) Euplotes octocarinatus Rab GTPase ...   175   4e-43
AC161399_25(AC161399|pid:none) Medicago truncatula chromosome 2 ...   175   4e-43
EF144593_1(EF144593|pid:none) Populus trichocarpa clone WS01111_...   175   5e-43
BT053479_1(BT053479|pid:none) Medicago truncatula clone MTYFP_FQ...   175   5e-43
EF084887_1(EF084887|pid:none) Picea sitchensis clone WS0292_K24 ...   174   1e-42
E71440(E71440)GTP-binding protein RAB2A - Arabidopsis thaliana        173   2e-42
Z73937_1(Z73937|pid:none) L.japonicus mRNA for small GTP-binding...   173   2e-42

 psg: 0.90  gvh: 0.45  alm: 0.45  top: 0.63  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSG560 is cyt

>VSG560F.Seq
CCCCGCGTCCGGGAAGAATATCATTTAAAGTGTATTGTAACAGGACCACCATTTGTTGGA
AAATCATCATTATTATTACAATTTTGTGAAAAAGAATTTTCATTTGAAATGGATACAACT
ATTGGTGTTGAATTTCAAACTAGAAGTATTTTAATTGATTCCAGTAAAATTAAATTGGAA
ATCTGGGATACAGCAGGTCAAGAATCATTTAGATCAATTACAACAAATTATTATAGAGGT
GCACATATTGCATTATTATGTTATGATATTACAAAACGTCAATCATTTCAATATTTAAGT
GGATGGATGGATGAAGTTAGACAAATGTCAAGTCCAAATATAGTAATAGCATTAATTGGT
AATAAATGTGATTGTAAAGATAAAAGAGTGATTACAACAGAGGAAGGAGCAAAATTTGCA
AAGGAAAACGATATCCTATTTTTTGAAACCTCTGCAAAAGATTATGAAAGTGTAGAA---
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