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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG554
Library VS
(Link to library)
Clone ID VSG554
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG554F
(Link to Original site)
Representative DNA sequence 
>VSG554 (VSG554Q) /CSM/VS/VSG5-C/VSG554Q.Seq.d/
CTAGTTCTAGATCGCGAGCGXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
LVLDRE---
Translated Amino Acid sequence (All Frames) 
Frame A:
LVLDRE---


Frame B:
*f*ias---


Frame C:
ssrsr---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ833 (VSJ833Q) /CSM/VS/VSJ8-B/VSJ833Q.Seq.d/                         40   0.001
VSI521 (VSI521Q) /CSM/VS/VSI5-A/VSI521Q.Seq.d/                         40   0.001
VSG554 (VSG554Q) /CSM/VS/VSG5-C/VSG554Q.Seq.d/                         40   0.001
VSF270 (VSF270Q) /CSM/VS/VSF2-C/VSF270Q.Seq.d/                         40   0.001
VSF147 (VSF147Q) /CSM/VS/VSF1-B/VSF147Q.Seq.d/                         40   0.001
VSD568 (VSD568Q) /CSM/VS/VSD5-C/VSD568Q.Seq.d/                         40   0.001
VSB156 (VSB156Q) /CSM/VS/VSB1-C/VSB156Q.Seq.d/                         40   0.001
SSM380 (SSM380Q) /CSM/SS/SSM3-D/SSM380Q.Seq.d/                         40   0.001
SSM332 (SSM332Q) /CSM/SS/SSM3-B/SSM332Q.Seq.d/                         40   0.001
SSM158 (SSM158Q) /CSM/SS/SSM1-C/SSM158Q.Seq.d/                         40   0.001
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM192655|BM192655.1 dai20b05.y1 NICHD_XGC_Emb4 Xenopus laevis cDNA clone IMAGE:4959705 5', mRNA sequence.    40  0.53  1
BG898360|BG898360.1 HOA55-1-E4.R HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA , mRNA sequence.    40  0.53  1
BQ215648|BQ215648.1 AGENCOURT_7559026 NIH_MGC_72 Homo sapiens cDNA clone IMAGE:6046394 5', mRNA sequence.    40  0.53  1
BM647315|BM647315.1 17000687323698 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600449627887 5', mRNA sequence.    40  0.53  1
BM600102|BM600102.1 17000687050893 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449733231 5', mRNA sequence.    40  0.53  1
BM585066|BM585066.1 17000687283198 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449687707 5', mRNA sequence.    40  0.53  1
BF783656|BF783656.1 602109451F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE:4237812 5', mRNA sequence.    40  0.53  1
BG170720|BG170720.1 602323825F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE:4426662 5', mRNA sequence.    40  0.53  1
BG781898|BG781898.1 SEAUMC001855 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0013_B1_D06_MR 5', mRNA sequence.    40  0.53  1
BG780880|BG780880.1 SEAUMC000837 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone 91222952_P01_012_PC_0024_A1_MR_H01 5', mRNA sequence.    40  0.53  1
dna update 2003. 8.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 13,018,451
protein update 2009. 3.23
PSORT -
5' end seq. ID VSG554F
5' end seq. 
>VSG554F.Seq
CTAGTTCTAGATCGCGAGCG----------
Length of 5' end seq. 20
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -