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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG530
Library VS
(Link to library)
Clone ID VSG530
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG530F
(Link to Original site)
Representative DNA sequence 
>VSG530 (VSG530Q) /CSM/VS/VSG5-B/VSG530Q.Seq.d/
CGTCCGAAATATAATTAAAATAAAAAAAANAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence 
VRNIIKIKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
rpkyn*nkkx---


Frame B:
VRNIIKIKK---


Frame C:
sei*lk*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG530 (VSG530Q) /CSM/VS/VSG5-B/VSG530Q.Seq.d/                         42   4e-04
VSI817 (VSI817Q) /CSM/VS/VSI8-A/VSI817Q.Seq.d/                         30   1.6
VSG828 (VSG828Q) /CSM/VS/VSG8-B/VSG828Q.Seq.d/                         30   1.6
VSG246 (VSG246Q) /CSM/VS/VSG2-B/VSG246Q.Seq.d/                         30   1.6
VSF217 (VSF217Q) /CSM/VS/VSF2-A/VSF217Q.Seq.d/                         30   1.6
VHL777 (VHL777Q) /CSM/VH/VHL7-D/VHL777Q.Seq.d/                         30   1.6
VHK393 (VHK393Q) /CSM/VH/VHK3-D/VHK393Q.Seq.d/                         30   1.6
VHG532 (VHG532Q) /CSM/VH/VHG5-B/VHG532Q.Seq.d/                         30   1.6
VHF413 (VHF413Q) /CSM/VH/VHF4-A/VHF413Q.Seq.d/                         30   1.6
VFO267 (VFO267Q) /CSM/VF/VFO2-C/VFO267Q.Seq.d/                         30   1.6
own update 2004. 8. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AI725128|AI725128.1 1027 PtIFG2 Pinus taeda cDNA clone 9001r, mRNA sequence.    38  4.4  1
dna update 2001. 3.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 32,232,988
protein update 2009. 3.23
PSORT -
5' end seq. ID VSG530F
5' end seq. 
>VSG530F.Seq
CGTCCGAAATATAATTAAAATAAAAAAAANA----------
Length of 5' end seq. 31
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -