>VSG512 (VSG512Q) /CSM/VS/VSG5-A/VSG512Q.Seq.d/
CCCCGCGTCCGAAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTT
TGGTAATTTGGCAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGA
AGCAATAGATTCCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTA
CAGTTTATGTAACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTA
TGGAGAAACCTTAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATT
CCTTAATGAGTGTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATTAA
TTAATTAATAAATAAATAAATAAACAATAATTTATTTATTTCAAAAAAAAAAXXXXXXXX
XX

PASEILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGVTKQEINDKIY
SLCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*dlsknnhklin
*link*innnlfiskk---

Frame A:
prvrnfkfifnyfifslfmfw*fgkcqiywmpnl*nlstrsnrfrtkiwsyktrn*r*dl
qfm*lnsntkltl*idccnlwrnls*fyirw*kc*pnl*ip**vllemlrplqkqpqin*
link*inkq*fiyfkkk---


Frame B:
PASEILNLFLIILSLAFLCFGNLANARYIGCQTCETLVQEAIDSVPKYGVTKQEINDKIY
SLCNSIPTLSSRCKLIVAIYGETLVDSILDGESANQTCKFLNECY*kc*dlsknnhklin
*link*innnlfiskk---


Frame C:
prpkf*iyf*lfyl*pfyvlviwqmpdildaklvkp*ykkq*ipyqnmelqnkkltirft
vyvtqfqh*ahvvn*llqfmekp*lily*mvkvltklvnslmsvirnvktspktttn*li
n**ink*tiiylfqkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG512 (VSG512Q) /CSM/VS/VSG5-A/VSG512Q.Seq.d/                        571   e-162
VSE130 (VSE130Q) /CSM/VS/VSE1-B/VSE130Q.Seq.d/                        571   e-162
VSD491 (VSD491Q) /CSM/VS/VSD4-D/VSD491Q.Seq.d/                        571   e-162
VSE786 (VSE786Q) /CSM/VS/VSE7-D/VSE786Q.Seq.d/                        539   e-152
VFM637 (VFM637Q) /CSM/VF/VFM6-B/VFM637Q.Seq.d/                         34   1.6
VFL375 (VFL375Q) /CSM/VF/VFL3-D/VFL375Q.Seq.d/                         34   1.6
VFJ328 (VFJ328Q) /CSM/VF/VFJ3-B/VFJ328Q.Seq.d/                         34   1.6
VFJ189 (VFJ189Q) /CSM/VF/VFJ1-D/VFJ189Q.Seq.d/                         34   1.6
VFI411 (VFI411Q) /CSM/VF/VFI4-A/VFI411Q.Seq.d/                         34   1.6
VFH889 (VFH889Q) /CSM/VF/VFH8-D/VFH889Q.Seq.d/                         34   1.6

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC026952|AC026952.4 Homo sapiens chromosome 18 clone RP11-459J8 map 18, WORKING DRAFT SEQUENCE.    44  1.4  1
AC074215|AC074215.3 Homo sapiens chromosome 11 clone RP11-605M17, WORKING DRAFT SEQUENCE, 17 unordered pieces.    36  5.0  3
AC102046|AC102046.2 Mus musculus clone RP23-354I16, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42  5.4  1
AC106979|AC106979.4 Rattus norvegicus clone CH230-205F12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  5.4  1
AL162429|AL162429.12 Human DNA sequence from clone RP11-290M17 on chromosome 1.    42  5.4  1
AC136760|AC136760.1 Homo sapiens chromosome 8 clone RP11-971A1 map 8, LOW-PASS SEQUENCE SAMPLING.    42  5.4  1
AC128119|AC128119.3 Rattus norvegicus clone CH230-415H17, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  5.4  1
CB737179|CB737179.1 AMGNNUC:NRHY5-00188-F1-A W Rat hypothalamus (10471) Rattus norvegicus cDNA clone nrhy5-00188-f1 5', mRNA sequence.    32  7.2  2
AP001002|AP001002.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-678K21, complete sequences.    36  7.9  4
AZ422131|AZ422131.1 1M0200M13R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0200M13 R, DNA sequence.    38  8.1  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...    46   4e-04
S21770(S21770)saposin-C - bovine                                       46   4e-04
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...    46   4e-04
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...    45   0.001
BC105409_1(BC105409|pid:none) Bos taurus prosaposin, mRNA (cDNA ...    45   0.001
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...    45   0.001
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...    45   0.001
AC115608_3(AC115608|pid:none) Dictyostelium discoideum chromosom...    44   0.001
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...    38   0.12
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...    38   0.12

 psg: 0.75  gvh: 0.74  alm: 0.20  top: 0.47  tms: 0.07  mit: 0.22  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSG512 is cyt

>VSG512F.Seq
CCCCGCGTCCGAAATTTTAAATTTATTTTTAATTATTTTATCTTTAGCCTTTTTATGTTT
TGGTAATTTGGCAAATGCCAGATATATTGGATGCCAAACTTGTGAAACCTTAGTACAAGA
AGCAATAGATTCCGTACCAAAATATGGAGTTACAAAACAAGAAATTAACGATAAGATTTA
CAGTTTATGTAACTCAATTCCAACACTAAGCTCACGTTGTAAATTGATTGTTGCAATTTA
TGGAGAAACCTTAGTTGATTCTATATTAGATGGTGAAAGTGCTAACCAAACTTGTAAATT
CCTTAATGAGTGTTATTAGAAATGTTAAGACCTCTCCAAAAACAACCACAAATTAATTAA
TTAATTAATAAATAAATAAATAAACAATAATTTATTTATTTCAAAAAAAAAA--------
--