VSG491 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VSG491
Library	VS (Link to library)
Clone ID	VSG491 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15444-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VS/VSG4-D/VSG491Q.Seq.d/
Representative seq. ID	VSG491E (Link to Original site)
Representative DNA sequence	>VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/ CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTC ACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCA GTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATC GTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCC CTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAA CAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGT CCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAA TCAAAGCATANAAGCTCTTTAATAGTTTAG
sequence update	2001. 3.25
Translated Amino Acid sequence	QKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQP KRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEA SVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDP VELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAK QMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKHXSSLIV*
Translated Amino Acid sequence (All Frames)	Frame A: QKQTKPAAATKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQP KRDLTHFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEA SVKKARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDP VELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAK QMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKHXSSLIV* Frame B: knklnqllppkllqpkpllpppnqrkssrrvkrksklepystpytpktsktlvlvsvfnq reilisltgqdtsnykdkdvfyrdrfhqqstnspvsltktplsiysnyintdqkkp qsrkldykslkpvlplqkvkllqklknqsntyvsvltlspnskrrklnsslptmltq lnssytyqpsadvwmshtvssnlnpdvnftetlhvlpslvstlltqtnslylnppn kcstitvnterpgvvtlylvqlvlspnvkklkpkkvpnqsixalf Frame C: ktntscchqscssqnrcchhqikesrqegkenqnnliqrlihqkrqklwywfrcstk erfnsfhslakihqitktktcfikeikgstnnqpihpclqkhrcpfiqiiriqtrrsl sqesiienrspcchskrsscsksktsptltfrylchqinrkeesisrhcprcps trliltnplqtygcpilyrqiiqirisshekrfmccphwcqlclkrtrfisirqt nvqqqtqkdlgwhfiwssscylsqtsks*sqrkfsqikaxklfnsl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/ 1719 0.0 VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/ 1667 0.0 VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/ 1647 0.0 VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/ 1637 0.0 VSK343 (VSK343Q) /CSM/VS/VSK3-B/VSK343Q.Seq.d/ 1560 0.0 FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/ 1423 0.0 VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/ 1372 0.0 FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/ 1368 0.0 FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/ 1354 0.0 FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/ 1352 0.0
own update	2003. 1. 9
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116100\|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence. 1082 0.0 2 BQ476680\|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence. 54 3e-08 3 BQ476431\|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence. 54 3e-06 2 BQ623728\|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence. 56 1e-05 2 CA755632\| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence. 60 5e-05 1 Y15171\|Y15171.1 Fugu rubripes surf3 and surf6 genes and partial surf1 gene. 46 4e-04 4 AJ457342\|AJ457342.1 Oryzias latipes EST, clone 631-134-12-N. 38 9e-04 3 CA845440\|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.002 2 CA330639\|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.002 2 CA846589\|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence. 46 0.002 2
dna update	2003.11.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54ZD1) RecName: Full=60S ribosomal protein L7a; 429 e-119 AY769275_1(AY769275\|pid:none) Bombyx mori ribosomal protein L7A ... 222 1e-56 DQ440224_1(DQ440224\|pid:none) Aedes aegypti clone AET-254 riboso... 222 1e-56 EU934303_1(EU934303\|pid:none) TSA: Anopheles darlingi AD-165 60S... 219 1e-55 BC122243_1(BC122243\|pid:none) Danio rerio zgc:153325, mRNA (cDNA... 217 4e-55 BC076693_1(BC076693\|pid:none) Xenopus tropicalis hypothetical pr... 216 7e-55 BC118908_1(BC118908\|pid:none) Xenopus tropicalis hypothetical pr... 216 7e-55 (Q2TBQ5) RecName: Full=60S ribosomal protein L7a; &BC109810_1(B... 215 1e-54 (O76732) RecName: Full=60S ribosomal protein L7a; 215 2e-54 BC052339_1(BC052339\|pid:none) Mus musculus ribosomal protein L7a... 215 2e-54
protein update	2009. 3.23
PSORT	psg: 0.77 gvh: 0.33 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.16 nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.50 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 88.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: nuclear >> prediction for VSG491 is cyt
5' end seq. ID	VSG491F
5' end seq.	>VSG491F.Seq CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACAC----------
Length of 5' end seq.	456
3' end seq. ID	VSG491Z
3' end seq.	>VSG491Z.Seq ----------AGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTTGAC AAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCA GTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAA GCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACC AAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTT GAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTC AAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTC ACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAA ATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCA GCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCA AAGCATANAAGCTCTTTAATAGTTTAG
Length of 3' end seq.	617
Connected seq. ID	VSG491P
Connected seq.	>VSG491P.Seq CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACAC----------AGAGATTAAAGGTT CCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACACCGCTGTCCATTTATTC AAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTATTGAAA ATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAAAAACCA GTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAGAAAGCT AAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTACCAACC CTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTAGGTGAA TTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCTGACTCA AACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGTGAACAC AGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCCAAACGT CAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGCATANAAGCTCTTTAATAGTT TAG
Length of connected seq.	1073
Full length Seq ID	VSG491E
Full length Seq.	>VSG491E.Seq CAAAAACAAACTAAACCAGCTGCTGCCACCAAAGCTGCTCCAGCCAAAACCGCTGTTGCC ACCACCAAATCAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTA TTCAACGCCTTATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCA AAGAGAGATTTAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGA CGTGTTTTATTAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTT GACAAAAACACCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCC TCAGTCAAGAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGT CAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTC ACCAAATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCA GTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATC GTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCC CTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAA CAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGT CCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAA TCAAAGCATANAAGCTCTTTAATAGTTTAG
Length of full length seq.	870

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas