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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG473
Library VS
(Link to library)
Clone ID VSG473
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG473P
(Link to Original site)
Representative DNA sequence 
>VSG473 (VSG473Q) /CSM/VS/VSG4-D/VSG473Q.Seq.d/
CTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGATTGTACCGCCC
CAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGATAGAATCAAAG
TTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGATAAATCAAAGA
TCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTAACCAAGAAAT
TCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACCAAAAACACCT
ACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACACTTTGGTCCC
AACCTTTGATCAAAATGGTAAACGAATAAATCTGGTTTAACATTTAAAAAAAAAAXXXXX
XXXXXCTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGATTGTAC
CGCCCCAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGATAGAAT
CAAAGTTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGATAAATC
AAAGATCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTAACCAA
GAAATTCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACCAAAAA
CACCTACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACACTTTG
GTCCCAACCTTNATCAAAAGGTAAACGAATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
lqykkps*rnhinsslivppqpvkssmlllskstytiesklttklvtsvqlllsqkinqr
ssstppshsqrdtsni*prns*nsnkseisyvllpppktptnsdtstlvtlnhknkhfgp
nl*skw*TNKSGLTFKKK---

---SVQKTVVKKSHKFVIDCTAPAGKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDK
SKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTKNTYELRYFNIGDSESQE*tl
wsqpxskgkri
Translated Amino Acid sequence (All Frames) 
Frame A:
lqykkps*rnhinsslivppqpvkssmlllskstytiesklttklvtsvqlllsqkinqr
ssstppshsqrdtsni*prns*nsnkseisyvllpppktptnsdtstlvtlnhknkhfgp
nl*skw*TNKSGLTFKKK---

---lqykkps*rnhinsslivppqpvkssmlllskstytiesklttklvtsvqlllsqki
nqrssstppshsqrdtsni*prns*nsnkseisyvllpppktptnsdtstlvtlnhknkh
fgpnlxqkvne

Frame B:
fstknrrkeit*irh*lyrpsr*nrrcccfrkvltr*nqs*qqsw*prfnccylkr*ikd
hhqhhhpilkeipqifnqeilkiqtnqrfltccchhqkhlrtqilqhw*l*itrintlvp
tfdqngkrinlv*hlkkk---

---fstknrrkeit*irh*lyrpsr*nrrcccfrkvltr*nqs*qqsw*prfnccylkr*
ikdhhqhhhpilkeipqifnqeilkiqtnqrfltccchhqkhlrtqilqhw*l*itrint
lvptxikr*tn

Frame C:
svqktvvkkshkfvidctapagkivdvaafekylhdrikvdnkvgnlgstvviskdkski
iinttipfskrylkyltkkflkfkqirdflrvvattkntyelryfnigdsesqe*tlwsq
plikmvne*iwfni*kk---

---SVQKTVVKKSHKFVIDCTAPAGKIVDVAAFEKYLHDRIKVDNKVGNLGSTVVISKDK
SKIIINTTIPFSKRYLKYLTKKFLKFKQIRDFLRVVATTKNTYELRYFNIGDSESQE*tl
wsqpxskgkri
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ148 (VSJ148Q) /CSM/VS/VSJ1-B/VSJ148Q.Seq.d/                        803   0.0
VSI831 (VSI831Q) /CSM/VS/VSI8-B/VSI831Q.Seq.d/                        803   0.0
VSG473 (VSG473Q) /CSM/VS/VSG4-D/VSG473Q.Seq.d/                        803   0.0
VSF864 (VSF864Q) /CSM/VS/VSF8-C/VSF864Q.Seq.d/                        803   0.0
VSF652 (VSF652Q) /CSM/VS/VSF6-C/VSF652Q.Seq.d/                        803   0.0
FC-AM01 (FC-AM01Q) /CSM/FC/FC-AM/FC-AM01Q.Seq.d/                      803   0.0
FC-219 (FC-219Q) /CSM/CG/CG-FC/FC-219Q.Seq.d/                         803   0.0
VHI259 (VHI259Q) /CSM/VH/VHI2-C/VHI259Q.Seq.d/                        797   0.0
FC-AT11 (FC-AT11Q) /CSM/FC/FC-AT/FC-AT11Q.Seq.d/                      789   0.0
VSK366 (VSK366Q) /CSM/VS/VSK3-C/VSK366Q.Seq.d/                        785   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AU114209|AU114209.1 Caenorhabditis elegans cDNA clone:yk716d8 : 3' end, single read.    42  8e-06  2
AV187840|AV187840.1 Caenorhabditis elegans cDNA clone:yk516e11 : 5' end, single read.    42  1e-05  2
AV201830|AV201830.1 Caenorhabditis elegans cDNA clone:yk542b5 : 5' end, single read.    42  4e-04  2
AV187261|AV187261.1 Caenorhabditis elegans cDNA clone:yk509f2 : 5' end, single read.    42  5e-04  2
C68387|C68387.1 C.elegans cDNA clone yk302a9 : 5' end, single read.    42  5e-04  2
C71228|C71228.1 C.elegans cDNA clone yk442e8 : 5' end, single read.    42  6e-04  2
AV191587|AV191587.1 Caenorhabditis elegans cDNA clone:yk595f3 : 5' end, single read.    42  6e-04  2
AV197144|AV197144.1 Caenorhabditis elegans cDNA clone:yk662f8 : 5' end, single read.    42  6e-04  2
AV193941|AV193941.1 Caenorhabditis elegans cDNA clone:yk623d2 : 5' end, single read.    42  6e-04  2
AV202078|AV202078.1 Caenorhabditis elegans cDNA clone:yk545d8 : 5' end, single read.    42  6e-04  2
dna update 2003. 8.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JE3) RecName: Full=60S ribosomal protein L22 1;                   151   2e-35
(Q54GK6) RecName: Full=60S ribosomal protein L22 2;                   148   2e-34
AF542529_8(AF542529|pid:none) Cryptococcus neoformans var. grubi...    82   2e-14
AF542530_16(AF542530|pid:none) Cryptococcus neoformans var. neof...    82   2e-14
AY710429_17(AY710429|pid:none) Cryptococcus gattii strain E566 M...    80   6e-14
AY710430_6(AY710430|pid:none) Cryptococcus gattii strain WM276 M...    79   2e-13
(P50886) RecName: Full=60S ribosomal protein L22;  &(Q28IL6) Rec...    78   3e-13
AF548320_1(AF548320|pid:none) Branchiostoma belcheri ribosomal p...    78   4e-13
AM270020_3(AM270020|pid:none) Aspergillus niger contig An02c0250...    77   5e-13
EF085347_1(EF085347|pid:none) Picea sitchensis clone WS02713_C14...    77   8e-13
protein update 2009. 3.23
PSORT 

 psg: 0.63  gvh: 0.25  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VSG473 is nuc
5' end seq. ID VSG473F
5' end seq. 
>VSG473F.Seq
CTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGATTGTACCGCCC
CAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGATAGAATCAAAG
TTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGATAAATCAAAGA
TCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTAACCAAGAAAT
TCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACCAAAAACACCT
ACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACACTTTGGTCCC
AACCTTTGATCAAAATGGTAAACGAATAAATCTGGTTTAACATTTAAAAAAAAAA-----
-----
Length of 5' end seq. 415
3' end seq. ID VSG473Z
3' end seq. 
>VSG473Z.Seq
----------CTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGAT
TGTACCGCCCCAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGAT
AGAATCAAAGTTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGAT
AAATCAAAGATCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTA
ACCAAGAAATTCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACC
AAAAACACCTACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACA
CTTTGGTCCCAACCTTNATCAAAAGGTAAACGAATA
Length of 3' end seq. 386
Connected seq. ID VSG473P
Connected seq. 
>VSG473P.Seq
CTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGATTGTACCGCCC
CAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGATAGAATCAAAG
TTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGATAAATCAAAGA
TCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTAACCAAGAAAT
TCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACCAAAAACACCT
ACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACACTTTGGTCCC
AACCTTTGATCAAAATGGTAAACGAATAAATCTGGTTTAACATTTAAAAAAAAAA-----
-----CTTCAGTACAAAAAACCGTCGTAAAGAAATCACATAAATTCGTCATTGATTGTAC
CGCCCCAGCCGGTAAAATCGTCGATGTTGCTGCTTTCGAAAAGTACTTACACGATAGAAT
CAAAGTTGACAACAAAGTTGGTAACCTCGGTTCAACTGTTGTTATCTCAAAAGATAAATC
AAAGATCATCATCAACACCACCATCCCATTCTCAAAGAGATACCTCAAATATTTAACCAA
GAAATTCTTAAAATTCAAACAAATCAGAGATTTCTTACGTGTTGTTGCCACCACCAAAAA
CACCTACGAACTCAGATACTTCAACATTGGTGACTCTGAATCACAAGAATAAACACTTTG
GTCCCAACCTTNATCAAAAGGTAAACGAATA
Length of connected seq. 801
Full length Seq ID -
Full length Seq. -
Length of full length seq. -