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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG471
Library VS
(Link to library)
Clone ID VSG471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01768-1
Original site URL
Representative seq. ID VSG471P
(Link to Original site)
Representative DNA sequence 
>VSG471 (VSG471Q) /CSM/VS/VSG4-C/VSG471Q.Seq.d/
TGCAAGCTCTCAAAGAATAATCATTGATCATATTATTTAATTTTCTTTTTCATACAAAAT
AATCAAACACAAGCACTATCACAAGCATAAGCATACACACACAATATAGTAATAGTAGTA
ATAATAAAAATAATAAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATT
AATGAATTCAGTATTCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAAC
TTTTGAAAATACTAATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATAT
TAAAACATATATGAAAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGT
TCAAGGTAGAATTAAATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAA
ATATAAAACTCCTGATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCA
ATTATCAAGAGGAAAGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAA
AAATTAAAAAATAAAAATAATAATAAAAAAAAAAXXXXXXXXXXTGCAAGCTCTCAAAGA
ATAATCATTGATCATATTATTTAATTTTNCTTTTTCATACAAAATAATCAAACACAAGCA
CTATCACAAGCATAAGCATACACACACAATATAGTAATAGTAGTAATAATAAACAATAAT
AAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTAT
TCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTA
ATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGA
AAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTA
AATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTG
ATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAA
AGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAAAAANANTAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
cklsknnh*syylifffiqnnqtqalsqa*aythnivivviikiikndqsik*tsfry*i
nefsilsky*tssn*k*wqnf*ky**nyvqnrlfsw*n*y*niyesfv*ckcg*s*ynqc
sr*n*ikn*rssktfkikf*i*ns*l*KSNHHCRSIFKSSIIKRKELKLKKNKNKKLKNK
KLKNKNNNKKK---

---ASSQRIIIDHII*fxffiqnnqtqalsqa*aythnivivviinnnkk*sih*inqf*
vld**iqysfqilnfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikli
qsmfkvelnqklkvfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*ki
kkkx*k
Translated Amino Acid sequence (All Frames) 
Frame A:
cklsknnh*syylifffiqnnqtqalsqa*aythnivivviikiikndqsik*tsfry*i
nefsilsky*tssn*k*wqnf*ky**nyvqnrlfsw*n*y*niyesfv*ckcg*s*ynqc
sr*n*ikn*rssktfkikf*i*ns*l*KSNHHCRSIFKSSIIKRKELKLKKNKNKKLKNK
KLKNKNNNKKK---

---cklsknnh*syylixlfhtk*sntstitsisihtqysnssnnkq**kminplnkpvl
gtrlmnsvffpniklqvirnsgktfentnkimfktdcsvgktdiktymkalydvnvdkvn
tinvqgriksktkglqkrsklnskyktpdykkaiitvdpslraqlsrgkn*n*kkikikn
*kkxxk

Frame B:
assqriiidhii*fsfsykiikhkhyhkhkhthti*******k**kminplnkpvlgtrl
mnsvffpniklqvirnsgktfentnkimfktdcsvgktdiktymkalydvnvdkvntinv
qgriksktkglqkrsklnskyktpdykkaiitvdpslraqlsrgkn*n*kkikikn*kik
n*kikiiikkk---

---ASSQRIIIDHII*fxffiqnnqtqalsqa*aythnivivviinnnkk*sih*inqf*
vld**iqysfqilnfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikli
qsmfkvelnqklkvfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*ki
kkkx*k

Frame C:
qalke*sliilfnflfhtk*sntstitsisihtqysnssnnknnkk*sih*inqf*vld*
*iqysfqilnfk*leivakllkiliklcskpivqlvklilkhi*klcmm*mwikliqsmf
kvelnqklkvfknvqn*ilniklliikkqssl*ihl*elnyqeerikikkk*k*kikk*k
ikk*k***kk---

---qalke*sliilfnfxfsykiikhkhyhkhkhthti*******tiikndqsik*tsfr
y*inefsilsky*tssn*k*wqnf*ky**nyvqnrlfsw*n*y*niyesfv*ckcg*s*y
nqcsr*n*ikn*rssktfkikf*i*ns*l*ksnhhcrsifkssiikrkelklkknknkkl
kkxxkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG471 (VSG471Q) /CSM/VS/VSG4-C/VSG471Q.Seq.d/                        733   0.0
VSH252 (VSH252Q) /CSM/VS/VSH2-C/VSH252Q.Seq.d/                        674   0.0
VSE301 (VSE301Q) /CSM/VS/VSE3-A/VSE301Q.Seq.d/                        674   0.0
VSD710 (VSD710Q) /CSM/VS/VSD7-A/VSD710Q.Seq.d/                        674   0.0
VSI826 (VSI826Q) /CSM/VS/VSI8-B/VSI826Q.Seq.d/                        664   0.0
SSH132 (SSH132Q) /CSM/SS/SSH1-B/SSH132Q.Seq.d/                        648   0.0
SSL127 (SSL127Q) /CSM/SS/SSL1-B/SSL127Q.Seq.d/                         46   0.001
SSH593 (SSH593Q) /CSM/SS/SSH5-D/SSH593Q.Seq.d/                         46   0.001
SSG208 (SSG208Q) /CSM/SS/SSG2-A/SSG208Q.Seq.d/                         46   0.001
SSB770 (SSB770Q) /CSM/SS/SSB7-C/SSB770Q.Seq.d/                         46   0.001
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.   674  0.0  6
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38  6e-08  13
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          44  8e-06  11
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    36  3e-05  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38  5e-04  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44  0.001  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44  0.001  11
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.001  11
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    36  0.005  13
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36  0.007  11
dna update 2003. 8.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117080_4(AC117080|pid:none) Dictyostelium discoideum chromosom...   236   1e-60
(Q5QXX9) RecName: Full=50S ribosomal protein L23;  &AE017340_191...    52   4e-05
(A4VHN2) RecName: Full=50S ribosomal protein L23;  &CP000304_775...    51   8e-05
BT053490_1(BT053490|pid:none) Medicago truncatula clone MTYFP_FQ...    50   2e-04
CP000612_214(CP000612|pid:none) Desulfotomaculum reducens MI-1, ...    48   5e-04
AY552545_78(AY552545|pid:none) Uncultured marine gamma proteobac...    48   7e-04
(Q2S914) RecName: Full=50S ribosomal protein L23;  &CP000155_594...    47   9e-04
AL035708_5(AL035708|pid:none) Arabidopsis thaliana DNA chromosom...    47   0.001
(Q3K5Z0) RecName: Full=50S ribosomal protein L23;  &(Q4K535) Rec...    47   0.001
(Q4FLM0) RecName: Full=50S ribosomal protein L23;  &CP000084_109...    47   0.001
protein update 2009. 3.23
PSORT 

 psg: 0.44  gvh: 0.11  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.43  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSG471 is nuc
5' end seq. ID VSG471F
5' end seq. 
>VSG471F.Seq
TGCAAGCTCTCAAAGAATAATCATTGATCATATTATTTAATTTTCTTTTTCATACAAAAT
AATCAAACACAAGCACTATCACAAGCATAAGCATACACACACAATATAGTAATAGTAGTA
ATAATAAAAATAATAAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATT
AATGAATTCAGTATTCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAAC
TTTTGAAAATACTAATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATAT
TAAAACATATATGAAAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGT
TCAAGGTAGAATTAAATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAA
ATATAAAACTCCTGATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCA
ATTATCAAGAGGAAAGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAA
AAATTAAAAAATAAAAATAATAATAAAAAAAAAA----------
Length of 5' end seq. 574
3' end seq. ID VSG471Z
3' end seq. 
>VSG471Z.Seq
----------TGCAAGCTCTCAAAGAATAATCATTGATCATATTATTTAATTTTNCTTTT
TCATACAAAATAATCAAACACAAGCACTATCACAAGCATAAGCATACACACACAATATAG
TAATAGTAGTAATAATAAACAATAATAAAAAATGATCAATCCATTAAATAAACCAGTTTT
AGGTACTAGATTAATGAATTCAGTATTCTTTCCAAATATTAAACTTCAAGTAATTAGAAA
TAGTGGCAAAACTTTTGAAAATACTAATAAAATTATGTTCAAAACCGATTGTTCAGTTGG
TAAAACTGATATTAAAACATATATGAAAGCTTTGTATGATGTAAATGTGGATAAAGTTAA
TACAATCAATGTTCAAGGTAGAATTAAATCAAAAACTAAAGGTCTTCAAAAACGTTCAAA
ATTAAATTCTAAATATAAAACTCCTGATTATAAAAAAGCAATCATCACTGTAGATCCATC
TTTAAGAGCTCAATTATCAAGAGGAAAGAATTAAAATTAAAAAAAAATAAAAATAAAAAA
TTAAAAAAAAANANTAAAAAA
Length of 3' end seq. 551
Connected seq. ID VSG471P
Connected seq. 
>VSG471P.Seq
TGCAAGCTCTCAAAGAATAATCATTGATCATATTATTTAATTTTCTTTTTCATACAAAAT
AATCAAACACAAGCACTATCACAAGCATAAGCATACACACACAATATAGTAATAGTAGTA
ATAATAAAAATAATAAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATT
AATGAATTCAGTATTCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAAC
TTTTGAAAATACTAATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATAT
TAAAACATATATGAAAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGT
TCAAGGTAGAATTAAATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAA
ATATAAAACTCCTGATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCA
ATTATCAAGAGGAAAGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAATAAA
AAATTAAAAAATAAAAATAATAATAAAAAAAAAA----------TGCAAGCTCTCAAAGA
ATAATCATTGATCATATTATTTAATTTTNCTTTTTCATACAAAATAATCAAACACAAGCA
CTATCACAAGCATAAGCATACACACACAATATAGTAATAGTAGTAATAATAAACAATAAT
AAAAAATGATCAATCCATTAAATAAACCAGTTTTAGGTACTAGATTAATGAATTCAGTAT
TCTTTCCAAATATTAAACTTCAAGTAATTAGAAATAGTGGCAAAACTTTTGAAAATACTA
ATAAAATTATGTTCAAAACCGATTGTTCAGTTGGTAAAACTGATATTAAAACATATATGA
AAGCTTTGTATGATGTAAATGTGGATAAAGTTAATACAATCAATGTTCAAGGTAGAATTA
AATCAAAAACTAAAGGTCTTCAAAAACGTTCAAAATTAAATTCTAAATATAAAACTCCTG
ATTATAAAAAAGCAATCATCACTGTAGATCCATCTTTAAGAGCTCAATTATCAAGAGGAA
AGAATTAAAATTAAAAAAAAATAAAAATAAAAAATTAAAAAAAAANANTAAAAAA
Length of connected seq. 1125
Full length Seq ID -
Full length Seq. -
Length of full length seq. -