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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG433
Library VS
(Link to library)
Clone ID VSG433
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15212-1
Original site URL
Representative seq. ID VSG433E
(Link to Original site)
Representative DNA sequence 
>VSG433 (VSG433Q) /CSM/VS/VSG4-B/VSG433Q.Seq.d/
ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAAT
CCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTA
TGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCC
ATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCA
AAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCAC
TCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGA
TCGCTCACGTTCAAGTTCAACGTGCTCAACAACAACGTAGAAGAACCTACAGAGCACATG
GTCGTATCAATCCATACATGTGTTCACCATCAACTGTTGAATTCATCCTCACTGAAGTTG
AAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATCTGTCGCCACCC
AAGAAATCTCTGCTTAAATAAAAAAATATAATTATTAAAAAAAATAAT
sequence update 2001. 3.25
Translated Amino Acid sequence 
*KLKMTKPVYSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAH
RECIPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKI
AHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILTEVEKAVPKPAEESAQKKKSVATQ
EISA*ikkyny*kk*
Translated Amino Acid sequence (All Frames) 
Frame A:
ien*k*qnqfiqrphptqknpanlvvlt*eftsrtpenqlwpskvcs*pelklt*ttf*p
ienvshsedskvv*vvlvkpkfsvpvkvdgqrnllntfyhsskmlkptlklrv*mlknsr
sltfkfnvlnnnveeptehmvvsihtcvhhqllnssslklkklsqnqlknppkrrnlspp
kksllk*kniiikknn


Frame B:
lkikndktslfkdpiqprkilqiswf*lknslqehqrisyghqryalnqs*sllkqrfsp
*rmypiqkiqrwcrsywssqnfryqsr*makeic*thfitppkc*sqr*s*gfkc*ktqd
rsrssstcsttt*knlqstwsyqsihvftinc*ihph*s*kscpkts*rirpkeeicrhp
rnlclnkki*llkki


Frame C:
*KLKMTKPVYSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAH
RECIPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKI
AHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILTEVEKAVPKPAEESAQKKKSVATQ
EISA*ikkyny*kk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG433 (VSG433Q) /CSM/VS/VSG4-B/VSG433Q.Seq.d/                       1096   0.0
VSF481 (VSF481Q) /CSM/VS/VSF4-D/VSF481Q.Seq.d/                       1096   0.0
VSJ734 (VSJ734Q) /CSM/VS/VSJ7-B/VSJ734Q.Seq.d/                       1086   0.0
VSE411 (VSE411Q) /CSM/VS/VSE4-A/VSE411Q.Seq.d/                       1076   0.0
VSB717 (VSB717Q) /CSM/VS/VSB7-A/VSB717Q.Seq.d/                       1074   0.0
FC-BN21 (FC-BN21Q) /CSM/FC/FC-BN/FC-BN21Q.Seq.d/                     1074   0.0
VSF310 (VSF310Q) /CSM/VS/VSF3-A/VSF310Q.Seq.d/                       1070   0.0
FC-538 (FC-538Q) /CSM/CG/CG-FC/FC-538Q.Seq.d/                        1059   0.0
VSH670 (VSH670Q) /CSM/VS/VSH6-C/VSH670Q.Seq.d/                       1057   0.0
VSI662 (VSI662Q) /CSM/VS/VSI6-C/VSI662Q.Seq.d/                       1055   0.0
own update 2001.11.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA755192|0    46   6e-06  3
AL395406|AL395406.1 T3 end of clone AR0AA023E08 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    38   5e-04  3
BP188408|BP188408.1 Dugesia japonica cDNA, clone: 02829_HH, expressed in the head.    56   5e-04  1
BP186921|BP186921.1 Dugesia japonica cDNA, clone: 00867_HH, expressed in the head.    56   5e-04  1
BP186264|BP186264.1 Dugesia japonica cDNA, clone: 01881_HH, expressed in the head.    56   5e-04  1
AL384688|AL384688.1 Medicago truncatula EST MtBC23G08F1 : T3 end of clone MtBC23G08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    50   8e-04  2
AL385159|AL385159.1 Medicago truncatula EST MtBC26G02F1 : T3 end of clone MtBC26G02 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    50   8e-04  2
BQ474545|BQ474545.1 biphyllus2a08.g Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus2a08 3', mRNA sequence.    36   0.001  3
AU274237|AU274237.1 Hemicentrotus pulcherrimus mRNA, clone:003a01r_G11, 5' end, single read.    44   0.001  2
BQ474204|BQ474204.1 biphyllus2a08.b Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus2a08 5', mRNA sequence.    36   0.001  3
dna update 2003.11.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB173559_1(AB173559|pid:none) Macaca fascicularis brain cDNA clo...   201   1e-50
AB374952_1(AB374952|pid:none) Solea senegalensis RPL17 mRNA for ...   201   1e-50
(P18621) RecName: Full=60S ribosomal protein L17; AltName: Full=...   200   3e-50
(P24049) RecName: Full=60S ribosomal protein L17; AltName: Full=...   199   3e-50
BC094640_1(BC094640|pid:none) Mus musculus ribosomal protein L17...   199   3e-50
AB098987_1(AB098987|pid:none) Bos taurus mRNA for similar to rib...   199   3e-50
AY650298_1(AY650298|pid:none) Macaca fascicularis ribosomal prot...   197   2e-49
BT043736_1(BT043736|pid:none) Salmo salar clone HM6_0489 ribosom...   196   4e-49
(A0NGY0) RecName: Full=60S ribosomal protein L17;                     195   6e-49
BC077192_1(BC077192|pid:none) Xenopus laevis MGC78885 protein, m...   194   1e-48
protein update 2009. 3.23
PSORT 

 psg: 0.55  gvh: 0.46  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.15
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VSG433 is mit
5' end seq. ID VSG433F
5' end seq. 
>VSG433F.Seq
ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAAT
CCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTA
TGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCC
ATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCA
AAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCAC
TCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGA
TCGC----------
Length of 5' end seq. 364
3' end seq. ID VSG433Z
3' end seq. 
>VSG433Z.Seq
----------ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAAC
CCAGAAAAATCCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGA
GAATCAGCTATGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAAC
GTTTTAGCCCATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACT
GGTCAAGCCAAAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACAC
ATTTTATCACTCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAA
AAACTCAAGATCGCTCACGTTCAAGTTCAACGTGCTCAACAACAACGTAGAAGAACCTAC
AGAGCACATGGTCGTATCAATCCATACATGTGTTCACCATCAACTGTTGAATTCATCCTC
ACTGAAGTTGAAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATCT
GTCGCCACCCAAGAAATCTCTGCTTAAATAAAAAAATATAATTATTAAAAAAAATAAT
Length of 3' end seq. 588
Connected seq. ID VSG433P
Connected seq. 
>VSG433P.Seq
ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAAT
CCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTA
TGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCC
ATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCA
AAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCAC
TCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGA
TCGC----------ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATC
CAACCCAGAAAAATCCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACAC
CAGAGAATCAGCTATGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAA
CAACGTTTTAGCCCATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCG
TACTGGTCAAGCCAAAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGA
ACACATTTTATCACTCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGT
TGAAAAACTCAAGATCGCTCACGTTCAAGTTCAACGTGCTCAACAACAACGTAGAAGAAC
CTACAGAGCACATGGTCGTATCAATCCATACATGTGTTCACCATCAACTGTTGAATTCAT
CCTCACTGAAGTTGAAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAA
ATCTGTCGCCACCCAAGAAATCTCTGCTTAAATAAAAAAATATAATTATTAAAAAAAATA
AT
Length of connected seq. 952
Full length Seq ID VSG433E
Full length Seq. 
>VSG433E.Seq
ATTGAAAATTAAAAATGACAAAACCAGTTTATTCAAAGACCCCATCCAACCCAGAAAAAT
CCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTTCAAGAACACCAGAGAATCAGCTA
TGGCCATCAAAGGTATGCTCTTAACCAGAGCTAAAGCTTACTTAAACAACGTTTTAGCCC
ATAGAGAATGTATCCCATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCA
AAATTTTCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTATCAC
TCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGTTGAAAAACTCAAGA
TCGCTCACGTTCAAGTTCAACGTGCTCAACAACAACGTAGAAGAACCTACAGAGCACATG
GTCGTATCAATCCATACATGTGTTCACCATCAACTGTTGAATTCATCCTCACTGAAGTTG
AAAAAGCTGTCCCAAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATCTGTCGCCACCC
AAGAAATCTCTGCTTAAATAAAAAAATATAATTATTAAAAAAAATAAT
Length of full length seq. 588