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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG402
Library VS
(Link to library)
Clone ID VSG402
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12240-1
Original site URL
Representative seq. ID VSG402P
(Link to Original site)
Representative DNA sequence 
>VSG402 (VSG402Q) /CSM/VS/VSG4-A/VSG402Q.Seq.d/
CAATAATTTTAGTAAAATAAAAAAAAAAXXXXXXXXXXAANAAAGAAAAAAAACCCNCAC
TAAAAAAAAAACCACCACACACACACACACCACAACACCCACACTTTATACATTATATTA
AATTTACATTCATCTCATTATAATATCCCCGAAGGGTTTTTATTTATTTATTTATTTGGT
TTTTGATTTTATATTAAAAGCCTTAGATTCAATTAATAATAAAAAGATTACATTGGTTTC
AAATATTAAAGTGAACCACCACTAATAATACAATAAAATATAAAATATAAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
NNFSKIKKK---

---XKEKKPXLKKKPPHTHTPQHPHFIHYIKFTFISL*yprrvfiylfiwflily*kp*i
qliikrlhwfqilk*tttnntikyki*i
Translated Amino Acid sequence (All Frames) 
Frame A:
q*f**nkkk---

---XKEKKPXLKKKPPHTHTPQHPHFIHYIKFTFISL*yprrvfiylfiwflily*kp*i
qliikrlhwfqilk*tttnntikyki*i

Frame B:
NNFSKIKKK---

---xkkknph*kknhhththhnthtlyiilnlhsshynipegflfiylfgf*fyikslrf
n***kdyigfky*seppliiq*nikyk*

Frame C:
iilvk*kk---

---xrkktxtkkkttththtttptlytly*iyihliiispkgfylfiylvfdfilkalds
innkkitlvsnikvnhh**ynki*nin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG402 (VSG402Q) /CSM/VS/VSG4-A/VSG402Q.Seq.d/                        129   3e-29
SSH325 (SSH325Q) /CSM/SS/SSH3-B/SSH325Q.Seq.d/                        129   3e-29
VSG155 (VSG155Q) /CSM/VS/VSG1-C/VSG155Q.Seq.d/                        103   1e-21
VSG329 (VSG329Q) /CSM/VS/VSG3-B/VSG329Q.Seq.d/                         38   0.071
VSD762 (VSD762Q) /CSM/VS/VSD7-C/VSD762Q.Seq.d/                         38   0.071
SSJ487 (SSJ487Q) /CSM/SS/SSJ4-D/SSJ487Q.Seq.d/                         36   0.28
SSH796 (SSH796Q) /CSM/SS/SSH7-D/SSH796Q.Seq.d/                         36   0.28
SSD755 (SSD755Q) /CSM/SS/SSD7-C/SSD755Q.Seq.d/                         36   0.28
SLD757 (SLD757Q) /CSM/SL/SLD7-C/SLD757Q.Seq.d/                         36   0.28
SLC678 (SLC678Q) /CSM/SL/SLC6-D/SLC678Q.Seq.d/                         36   0.28
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH601510|BH601510.1 BOGEC54TF BOGE Brassica oleracea genomic clone BOGEC54, DNA sequence.    42  0.064  2
BH986773|BH986773.1 oed19h01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  0.099  2
AC011886|AC011886.3 Homo sapiens clone RP11-18I5, WORKING DRAFT SEQUENCE, 29 unordered pieces.    44  0.93  1
AC007416|AC007416.12 Drosophila melanogaster, chromosome 2L, region 28B-28B, BAC clone BACR08I01, complete sequence.    38  1.0  2
AE003619|AE003619.3 Drosophila melanogaster chromosome 2L section 28 of 83 of the complete sequence.    38  1.7  2
AL035402|AL035402.7 Human DNA sequence from clone 88J8 on chromosome 6p21.31-21.33.  Contains a gene for a novel 7 transmembrane receptor (rhodopsin  family) (olfactory receptor like) protein, pseudogene similar to  olfactory receptor genes and a GTP binding protein SARA (mouse)  pseudogene. Contains ESTs, an STS and GSS.    42  1.7  3
AC096082|AC096082.5 Rattus norvegicus clone CH230-11O17, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38  3.6  4
BM058328|BM058328.1 2189-54 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2189-54, mRNA sequence.    42  3.7  1
BM057177|BM057177.1 2163-12 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2163-12, mRNA sequence.    42  3.7  1
CD711212|CD711212.1 VVC006C03_415491 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC006C03 5, mRNA sequence.    42  3.7  1
dna update 2003. 8.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF193903_21(AF193903|pid:none) Cafeteria roenbergensis mitochond...    33   3.8
protein update 2009. 3.23
PSORT 

 psg: 0.33  gvh: 0.07  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for VSG402 is nuc
5' end seq. ID VSG402F
5' end seq. 
>VSG402F.Seq
CAATAATTTTAGTAAAATAAAAAAAAAA----------
Length of 5' end seq. 28
3' end seq. ID VSG402Z
3' end seq. 
>VSG402Z.Seq
----------AANAAAGAAAAAAAACCCNCACTAAAAAAAAAACCACCACACACACACAC
ACCACAACACCCACACTTTATACATTATATTAAATTTACATTCATCTCATTATAATATCC
CCGAAGGGTTTTTATTTATTTATTTATTTGGTTTTTGATTTTATATTAAAAGCCTTAGAT
TCAATTAATAATAAAAAGATTACATTGGTTTCAAATATTAAAGTGAACCACCACTAATAA
TACAATAAAATATAAAATATAAATAA
Length of 3' end seq. 256
Connected seq. ID VSG402P
Connected seq. 
>VSG402P.Seq
CAATAATTTTAGTAAAATAAAAAAAAAA----------AANAAAGAAAAAAAACCCNCAC
TAAAAAAAAAACCACCACACACACACACACCACAACACCCACACTTTATACATTATATTA
AATTTACATTCATCTCATTATAATATCCCCGAAGGGTTTTTATTTATTTATTTATTTGGT
TTTTGATTTTATATTAAAAGCCTTAGATTCAATTAATAATAAAAAGATTACATTGGTTTC
AAATATTAAAGTGAACCACCACTAATAATACAATAAAATATAAAATATAAATAA
Length of connected seq. 284
Full length Seq ID -
Full length Seq. -
Length of full length seq. -