VSG401
Library VS
(Link to library)
Clone ID VSG401
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12581-1
Original site URL
Representative seq. ID VSG401P
(Link to Original site)
Representative DNA sequence
>VSG401 (VSG401Q) /CSM/VS/VSG4-A/VSG401Q.Seq.d/
CTTAAAGAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAGTA
TTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAATGATA
ATAGTGAATTATTTTTTAAATTATTAAAAAATCAATATATAAAAAAAAAAXXXXXXXXXX
CTTAAAAGAAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAG
TATTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
*RDKVEEIEEQEEEEEEYSIIFKIIKKVNNNKQQQEINDNSELFFKLLKNQYIKKK---

---LKEDKVEEIEEQEEEEEEYSIIFKIIKKVNNNKQQQEIN


Translated Amino Acid sequence (All Frames)
Frame A:
lkeikskklkskkkkkknivlflkl*kkliiinnnkklmiivnyflny*kini*kk---

---lkrr*srrn*rarrrrrri*yyf*nykks****tttrn*

Frame B:
lkr*srrn*rarrrrrri*yyf*nykks****tttrn*****iif*iikksiykkk---

---LKEDKVEEIEEQEEEEEEYSIIFKIIKKVNNNKQQQEIN

Frame C:
*RDKVEEIEEQEEEEEEYSIIFKIIKKVNNNKQQQEINDNSELFFKLLKNQYIKKK---

---*kkikskklkskkkkkknivlflkl*kkliiinnnkkl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG401 (VSG401Q) /CSM/VS/VSG4-A/VSG401Q.Seq.d/ 170 8e-42
VSH592 (VSH592Q) /CSM/VS/VSH5-D/VSH592Q.Seq.d/ 153 2e-36
VSH613 (VSH613Q) /CSM/VS/VSH6-A/VSH613Q.Seq.d/ 141 7e-33
FC-AZ22 (FC-AZ22Q) /CSM/FC/FC-AZ/FC-AZ22Q.Seq.d/ 46 3e-04
VHP464 (VHP464Q) /CSM/VH/VHP4-C/VHP464Q.Seq.d/ 44 0.001
VHN433 (VHN433Q) /CSM/VH/VHN4-B/VHN433Q.Seq.d/ 44 0.001
CHL142 (CHL142Q) /CSM/CH/CHL1-B/CHL142Q.Seq.d/ 44 0.001
CHB191 (CHB191Q) /CSM/CH/CHB1-D/CHB191Q.Seq.d/ 44 0.001
CHF454 (CHF454Q) /CSM/CH/CHF4-C/CHF454Q.Seq.d/ 42 0.005
CHD624 (CHD624Q) /CSM/CH/CHD6-A/CHD624Q.Seq.d/ 42 0.005

own update 2003. 1. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 38 2e-06 8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 1e-05 8
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P4. 38 2e-05 7
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 38 7e-05 7
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 36 8e-05 8
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 38 1e-04 8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 1e-04 8
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 36 1e-04 7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 3e-04 8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 44 0.001 9
dna update 2003. 8.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 36,603,498
protein update 2009. 3.23
PSORT

psg: 0.75 gvh: 0.12 alm: 0.65 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for VSG401 is nuc

5' end seq. ID VSG401F
5' end seq.
>VSG401F.Seq
CTTAAAGAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAGTA
TTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAATGATA
ATAGTGAATTATTTTTTAAATTATTAAAAAATCAATATATAAAAAAAAAA----------
Length of 5' end seq. 170
3' end seq. ID VSG401Z
3' end seq.
>VSG401Z.Seq
----------CTTAAAAGAAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAG
AAGAATATAGTATTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAG
AAATTAAT
Length of 3' end seq. 118
Connected seq. ID VSG401P
Connected seq.
>VSG401P.Seq
CTTAAAGAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAGTA
TTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAATGATA
ATAGTGAATTATTTTTTAAATTATTAAAAAATCAATATATAAAAAAAAAA----------
CTTAAAAGAAGATAAAGTCGAAGAAATTGAAGAGCAAGAAGAAGAAGAAGAAGAATATAG
TATTATTTTTAAAATTATAAAAAAAGTTAATAATAATAAACAACAACAAGAAATTAAT
Length of connected seq. 288
Full length Seq ID -
Full length Seq. -
Length of full length seq. -