VSG396
Library VS
(Link to library)
Clone ID VSG396
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG396F
(Link to Original site)
Representative DNA sequence
>VSG396 (VSG396Q) /CSM/VS/VSG3-D/VSG396Q.Seq.d/
CCCGCGTCCGATTTATTAAAGAAAAAAAAAAXXXXXXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
PASDLLKKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
PASDLLKKKK---


Frame B:
prpiy*rkk---


Frame C:
rvrfikekk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG396 (VSG396Q) /CSM/VS/VSG3-D/VSG396Q.Seq.d/ 42 4e-04
VSI710 (VSI710Q) /CSM/VS/VSI7-A/VSI710Q.Seq.d/ 32 0.40
VSH343 (VSH343Q) /CSM/VS/VSH3-B/VSH343Q.Seq.d/ 30 1.6
VSD129 (VSD129Q) /CSM/VS/VSD1-B/VSD129Q.Seq.d/ 30 1.6
VSH366 (VSH366Q) /CSM/VS/VSH3-C/VSH366Q.Seq.d/ 28 6.2
VSG849 (VSG849Q) /CSM/VS/VSG8-C/VSG849Q.Seq.d/ 28 6.2
VSG756 (VSG756Q) /CSM/VS/VSG7-C/VSG756Q.Seq.d/ 28 6.2

own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 172636
Number of Sequences: 25389025
Number of extensions: 172636
Number of successful extensions: 172324
Number of sequences better than 10.0: 0
length of query: 41
length of database: P,810,049,100
effective HSP length: 20
effective length of query: 21
effective length of database: P,302,268,600
effective search space: 678347640600
effective search space used: 678347640600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003. 8.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.302 0.123 0.316

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 41,676,267
protein update 2009. 3.23
PSORT -
5' end seq. ID VSG396F
5' end seq.
>VSG396F.Seq
CCCGCGTCCGATTTATTAAAGAAAAAAAAAA----------
Length of 5' end seq. 31
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -