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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG339
Library VS
(Link to library)
Clone ID VSG339
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15259-1
Original site URL
Representative seq. ID VSG339P
(Link to Original site)
Representative DNA sequence 
>VSG339 (VSG339Q) /CSM/VS/VSG3-B/VSG339Q.Seq.d/
AAATGGCCAAGTCAAAGAATNCTCAACCCATCACAAAAACAGAAAGGACCACAGAAACGG
TATTAAAAAAGCCGTCGTCCACAAAAAGACCTCCTCAAAAGGTGTTGAATTAGGTTTCGC
CAGAAATCAAAGATACGCTCGTATTGGTACTGAAATCAAAAGATACGTTCGTGGTGATAT
GCAAGAGGTCAAAGCCCACAAAAACCCAAGACAACCATTAAAGACCATCGTCGCTGCTGC
TAAAGCCAAATTAGCTGCCAAAAAAGCTGCTGCCAAAAAATAAATAAATAATGATTTTTA
ATAACGTCGATNAAAAAAAAAXXXXXXXXXXAAAGAAATGGCCAAGTCAAAGAATCACTC
AACCCATCACAAAAACAGAAAGGACCACAGAAACGGTATTAAAAAAGCCGTCGTCCACAA
AAAGACCTCCTCAAAAGGTGTTGAATTAGGTTTCGCCAGAAATCAAAGATACGCTCGTAT
TGGTACTGAAATCAAAAGATACGTTCGTGGTGATATGCAAGAGGTCAAAGCCCACAAAAA
CCCAAGACAACCATTAAAGACCATCGTCGCTGCTGCTAAAGCCAAATTAGCTGCCAAAAA
AGCTGCTGCCAAAAAATAAATAAATAANATTTTTAATAAC
sequence update 2001. 3.22
Translated Amino Acid sequence 
maksknxqpitkterttetvlkkpsstkrppqkvln*vspeikdtlvlvlkskdtfvvic
krskptktqdnh*rpsslllkpn*lpkkllpknk*IMIFNNVDXKK---

---KEMAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIGTEIKRY
VRGDMQEVKAHKNPRQPLKTIVAAAKAKLAAKKAAAKK*inxifnn
Translated Amino Acid sequence (All Frames) 
Frame A:
kwpsqrxlnpsqkqkgpqkry*ksrrpqkdllkrc*irfrqkskirsywy*nqkirsw*y
argqspqkpkttikdhrrcc*sqiscqksccqkink**flitsxkkk---

---KEMAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIGTEIKRY
VRGDMQEVKAHKNPRQPLKTIVAAAKAKLAAKKAAAKK*inxifnn

Frame B:
ngqvkexsthhknrkdhrngikkavvhkktsskgvelgfarnqryarigteikryvrgdm
qevkahknprqplktivaaakaklaakkaaakk*inndf**rrxkk---

---kkwpsqritqpitkterttetvlkkpsstkrppqkvln*vspeikdtlvlvlkskdt
fvvickrskptktqdnh*rpsslllkpn*lpkkllpknk*ixfli

Frame C:
maksknxqpitkterttetvlkkpsstkrppqkvln*vspeikdtlvlvlkskdtfvvic
krskptktqdnh*rpsslllkpn*lpkkllpknk*IMIFNNVDXKK---

---rngqvkeslnpsqkqkgpqkry*ksrrpqkdllkrc*irfrqkskirsywy*nqkir
sw*yargqspqkpkttikdhrrcc*sqiscqksccqkink*xf**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK408 (VSK408Q) /CSM/VS/VSK4-A/VSK408Q.Seq.d/                        486   e-136
VSJ691 (VSJ691Q) /CSM/VS/VSJ6-D/VSJ691Q.Seq.d/                        486   e-136
VSI235 (VSI235Q) /CSM/VS/VSI2-B/VSI235Q.Seq.d/                        486   e-136
VSH590 (VSH590Q) /CSM/VS/VSH5-D/VSH590Q.Seq.d/                        486   e-136
VSH172 (VSH172Q) /CSM/VS/VSH1-C/VSH172Q.Seq.d/                        486   e-136
VSG339 (VSG339Q) /CSM/VS/VSG3-B/VSG339Q.Seq.d/                        486   e-136
VSD322 (VSD322Q) /CSM/VS/VSD3-A/VSD322Q.Seq.d/                        486   e-136
VSB149 (VSB149Q) /CSM/VS/VSB1-C/VSB149Q.Seq.d/                        486   e-136
VHO324 (VHO324Q) /CSM/VH/VHO3-A/VHO324Q.Seq.d/                        486   e-136
VSI208 (VSI208Q) /CSM/VS/VSI2-A/VSI208Q.Seq.d/                        480   e-134
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW164568|AW164568.1 se75f09.y1 Gm-c1023 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1023-546 5' similar to TR:Q39892 Q39892 NUCLEOSOME ASSEMBLY PROTEIN 1. ;, mRNA sequence.    54  0.002  1
AI495777|AI495777.1 sb16b06.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-8940 5' similar to TR:Q39892 Q39892 NUCLEOSOME ASSEMBLY PROTEIN 1. ;, mRNA sequence.    54  0.002  1
CA994634|CA994634.1 Hc_egg_22D08_SKPL Haemonchus contortus egg SL1 from David Knox Haemonchus contortus cDNA clone Hc_egg_22D08 5' similar to Q9XS36 Ribosomal protein L29/heparin/heparan su Sus scrofa (Pig), mRNA sequence.    48  0.13  1
CA994373|CA994373.1 Hc_egg_19B07_SKPL Haemonchus contortus egg SL1 from David Knox Haemonchus contortus cDNA clone Hc_egg_19B07 5' similar to F54C9.5 CE02255 locus:rpl-5 60S ribosomal protein L5, mRNA sequence.    48  0.13  1
CA994375|CA994375.1 Hc_egg_19B09_SKPL Haemonchus contortus egg SL1 from David Knox Haemonchus contortus cDNA clone Hc_egg_19B09 5' similar to Q9XS36 Ribosomal protein L29/heparin/heparan su Sus scrofa (Pig), mRNA sequence.    48  0.13  1
BI595045| ribosomal protein L29 - Rattus norvegicus, mRNA sequence.    48  0.13  1
BI978642|BI978642.1 vF04 Old Blush petal SMART library Rosa chinensis cDNA 5' similar to ribosomal protein L29 (RPL29), mRNA sequence.    48  0.13  1
BF186561| (AB016798) ribosomal protein L29/cell surface heparin binding, mRNA sequence.    48  0.13  1
CA994443|CA994443.1 Hc_egg_20A01_SKPL Haemonchus contortus egg SL1 from David Knox Haemonchus contortus cDNA clone Hc_egg_20A01 5' similar to Q9XS36 Ribosomal protein L29/heparin/heparan su Sus scrofa (Pig), mRNA sequence.    48  0.13  1
BQ106289|BQ106289.1 gg1230.e Rose Petals (Golden Gate) Lambda Zap Express Library Rosa hybrid cultivar cDNA clone gg1230.e 5', mRNA sequence.    48  0.13  1
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TW3) RecName: Full=60S ribosomal protein L29;                     159   5e-38
EF081587_1(EF081587|pid:none) Picea sitchensis clone WS02714_A13...    63   6e-09
EF144317_1(EF144317|pid:none) Populus trichocarpa clone PX0015_I...    63   8e-09
AC126780_31(AC126780|pid:none) Medicago truncatula clone mth2-10...    62   1e-08
AF204786_1(AF204786|pid:none) Lycopersicon esculentum ripening r...    62   1e-08
CR382134_651(CR382134|pid:none) Debaryomyces hansenii strain CBS...    61   2e-08
AM910994_456(AM910994|pid:none) Plasmodium knowlesi strain H chr...    61   3e-08
EU965693_1(EU965693|pid:none) Zea mays clone 288030 60S ribosoma...    60   4e-08
EU954467_1(EU954467|pid:none) Zea mays clone 1468352 60S ribosom...    60   4e-08
EU953347_1(EU953347|pid:none) Zea mays clone 1401157 60S ribosom...    60   4e-08
protein update 2009. 3.23
PSORT 

 psg: 0.40  gvh: 0.18  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSG339 is nuc
5' end seq. ID VSG339F
5' end seq. 
>VSG339F.Seq
AAATGGCCAAGTCAAAGAATNCTCAACCCATCACAAAAACAGAAAGGACCACAGAAACGG
TATTAAAAAAGCCGTCGTCCACAAAAAGACCTCCTCAAAAGGTGTTGAATTAGGTTTCGC
CAGAAATCAAAGATACGCTCGTATTGGTACTGAAATCAAAAGATACGTTCGTGGTGATAT
GCAAGAGGTCAAAGCCCACAAAAACCCAAGACAACCATTAAAGACCATCGTCGCTGCTGC
TAAAGCCAAATTAGCTGCCAAAAAAGCTGCTGCCAAAAAATAAATAAATAATGATTTTTA
ATAACGTCGATNAAAAAAAAA----------
Length of 5' end seq. 321
3' end seq. ID VSG339Z
3' end seq. 
>VSG339Z.Seq
----------AAAGAAATGGCCAAGTCAAAGAATCACTCAACCCATCACAAAAACAGAAA
GGACCACAGAAACGGTATTAAAAAAGCCGTCGTCCACAAAAAGACCTCCTCAAAAGGTGT
TGAATTAGGTTTCGCCAGAAATCAAAGATACGCTCGTATTGGTACTGAAATCAAAAGATA
CGTTCGTGGTGATATGCAAGAGGTCAAAGCCCACAAAAACCCAAGACAACCATTAAAGAC
CATCGTCGCTGCTGCTAAAGCCAAATTAGCTGCCAAAAAAGCTGCTGCCAAAAAATAAAT
AAATAANATTTTTAATAAC
Length of 3' end seq. 309
Connected seq. ID VSG339P
Connected seq. 
>VSG339P.Seq
AAATGGCCAAGTCAAAGAATNCTCAACCCATCACAAAAACAGAAAGGACCACAGAAACGG
TATTAAAAAAGCCGTCGTCCACAAAAAGACCTCCTCAAAAGGTGTTGAATTAGGTTTCGC
CAGAAATCAAAGATACGCTCGTATTGGTACTGAAATCAAAAGATACGTTCGTGGTGATAT
GCAAGAGGTCAAAGCCCACAAAAACCCAAGACAACCATTAAAGACCATCGTCGCTGCTGC
TAAAGCCAAATTAGCTGCCAAAAAAGCTGCTGCCAAAAAATAAATAAATAATGATTTTTA
ATAACGTCGATNAAAAAAAAA----------AAAGAAATGGCCAAGTCAAAGAATCACTC
AACCCATCACAAAAACAGAAAGGACCACAGAAACGGTATTAAAAAAGCCGTCGTCCACAA
AAAGACCTCCTCAAAAGGTGTTGAATTAGGTTTCGCCAGAAATCAAAGATACGCTCGTAT
TGGTACTGAAATCAAAAGATACGTTCGTGGTGATATGCAAGAGGTCAAAGCCCACAAAAA
CCCAAGACAACCATTAAAGACCATCGTCGCTGCTGCTAAAGCCAAATTAGCTGCCAAAAA
AGCTGCTGCCAAAAAATAAATAAATAANATTTTTAATAAC
Length of connected seq. 630
Full length Seq ID -
Full length Seq. -
Length of full length seq. -