>AFB826 (AFB826Q) /CSM/AF/AFB8-B/AFB826Q.Seq.d/
XXXXXXXXXXTGGTAGTAGTAGTGGTANCACCANTAATAATAATAATAATAATAATAATA
GTTTGGTACATGGGGATATAAATATAGAGGAATTAATAAAGAATATGACAATCGATCAAT
ATTACGATAACAAAGTATCAATGATGAATATCGTTGATCTTATGCCCGGTAAAGAGATTA
CAATGATTTCAAAATATTTAAAAGAATTACCAACTATAAAAACTAATAACAATAATAATA
ATAATAATAGCAAACCAAATCCAAATATAGATAGTAGTAATGGAGATGAGATAATATCGA
TAACCATACCGAAACAGACATCAATAACATCACCATTCCCACCAATAAATATAGAGATTA
CAATCGATGGTGAAGTTAGTATACCACTTCACTCATCGGTATGTCCATCACATCCATCAT
CAATTTCATCATTGACCCTATGTGAGAATATCATATCATCGAAACATGATATCAAAAGTA
ATTCCTTATTGAATGATGATTTCAATTTACTCATTGGTTTAGAATCAGAATTGCATCACA
GTGGTTGGACAACATGTACATTATCACCCTCCTCATCACCTCCATTATTATCCTCCTCTC
CAAATTCACTACCACCAACCACTGTAATTTCAACTTTGATAAATTTAAATCAACCAACAC
CACCACTTGTCGATAGAGCT

---GSSSGXTXNNNNNNNNSLVHGDINIEELIKNMTIDQYYDNKVSMMNIVDLMPGKEIT
MISKYLKELPTIKTNNNNNNNNSKPNPNIDSSNGDEIISITIPKQTSITSPFPPINIEIT
IDGEVSIPLHSSVCPSHPSSISSLTLCENIISSKHDIKSNSLLNDDFNLLIGLESELHHS
GWTTCTLSPSSSPPLLSSSPNSLPPTTVISTLINLNQPTPPLVDRA

Frame A:
---GSSSGXTXNNNNNNNNSLVHGDINIEELIKNMTIDQYYDNKVSMMNIVDLMPGKEIT
MISKYLKELPTIKTNNNNNNNNSKPNPNIDSSNGDEIISITIPKQTSITSPFPPINIEIT
IDGEVSIPLHSSVCPSHPSSISSLTLCENIISSKHDIKSNSLLNDDFNLLIGLESELHHS
GWTTCTLSPSSSPPLLSSSPNSLPPTTVISTLINLNQPTPPLVDRA


Frame B:
---vvvvvxpxiiiiiiiivwymgi*i*rn**ri*qsinititkyq**islilcpvkrlq
*fqni*knyql*klitiiiiiianqiqi*ivvmemr*yr*pyrnrhq*hhhshq*i*rlq
smvklvyhfthryvhhihhqfhh*pyvrisyhrnmiskvipy*mmisiyslv*nqncitv
vgqhvhyhpphhlhyypplqihyhqpl*fql**i*inqhhhlsie


Frame C:
---***wxhx*********fgtwgykyrginkeydnrsilr*qsindeyr*syar*rdyn
dfkifkritnykn**q******qtkskyr***wr*dnidnhtetdinnitiptnkyrdyn
rw*s*yttsligmsitsiinfiidpm*eyhiiet*yqk*flie**fqfthwfririasqw
ldnmyiitllitsiiillskftttnhcnfnfdkfkstntttcr*s

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB826 (AFB826Q) /CSM/AF/AFB8-B/AFB826Q.Seq.d/                        854   0.0
AFK636 (AFK636Q) /CSM/AF/AFK6-B/AFK636Q.Seq.d/                         40   0.043
VSF736 (VSF736Q) /CSM/VS/VSF7-B/VSF736Q.Seq.d/                         36   0.67
VHG108 (VHG108Q) /CSM/VH/VHG1-A/VHG108Q.Seq.d/                         36   0.67
VFO655 (VFO655Q) /CSM/VF/VFO6-C/VFO655Q.Seq.d/                         36   0.67
VFN480 (VFN480Q) /CSM/VF/VFN4-D/VFN480Q.Seq.d/                         36   0.67
VFM824 (VFM824Q) /CSM/VF/VFM8-A/VFM824Q.Seq.d/                         36   0.67
VFL280 (VFL280Q) /CSM/VF/VFL2-D/VFL280Q.Seq.d/                         36   0.67
VFH733 (VFH733Q) /CSM/VF/VFH7-B/VFH733Q.Seq.d/                         36   0.67
VFH616 (VFH616Q) /CSM/VF/VFH6-A/VFH616Q.Seq.d/                         36   0.67

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   850  0.0  3
AC139699|AC139699.5 Homo sapiens clone RP11-756K23, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46  0.56  1
AC105508|AC105508.4 Rattus norvegicus clone CH230-240F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.56  1
AC027757|AC027757.3 Homo sapiens chromosome 3 clone RP11-663C11 map 3, WORKING DRAFT SEQUENCE, 48 unordered pieces.    46  0.56  1
BB464840|BB464840.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130095A15, 3' end partial sequence, similar to ddbj:AF175968 Homo sapiens Leman coiled-coil protein (LCCP) mRNA.    46  0.56  1
AC123892|AC123892.3 Rattus norvegicus clone CH230-265I22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46  0.80  3
AQ828855|AQ828855.1 HS_4809_A1_B12_SP6E CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=4809 Col=23 Row=C, genomic survey sequence.    40  1.4  2
U32174|U32174.1 Dictyostelium discoideum spore lysis A (splA) gene, complete cds.    34  1.9  3
AB102778|AB102778.1 Dictyostelium discoideum kin5 mRNA for kinesin-related protein DdKin5, complete cds.    36  2.0  3
AC106652|AC106652.4 Rattus norvegicus clone CH230-66P3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  2.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_59(AC117176|pid:none) Dictyostelium discoideum chromoso...   254   2e-66

 psg: 0.81  gvh: 0.12  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for AFB826 is nuc

>AFB826Z.Seq
----------TGGTAGTAGTAGTGGTANCACCANTAATAATAATAATAATAATAATAATA
GTTTGGTACATGGGGATATAAATATAGAGGAATTAATAAAGAATATGACAATCGATCAAT
ATTACGATAACAAAGTATCAATGATGAATATCGTTGATCTTATGCCCGGTAAAGAGATTA
CAATGATTTCAAAATATTTAAAAGAATTACCAACTATAAAAACTAATAACAATAATAATA
ATAATAATAGCAAACCAAATCCAAATATAGATAGTAGTAATGGAGATGAGATAATATCGA
TAACCATACCGAAACAGACATCAATAACATCACCATTCCCACCAATAAATATAGAGATTA
CAATCGATGGTGAAGTTAGTATACCACTTCACTCATCGGTATGTCCATCACATCCATCAT
CAATTTCATCATTGACCCTATGTGAGAATATCATATCATCGAAACATGATATCAAAAGTA
ATTCCTTATTGAATGATGATTTCAATTTACTCATTGGTTTAGAATCAGAATTGCATCACA
GTGGTTGGACAACATGTACATTATCACCCTCCTCATCACCTCCATTATTATCCTCCTCTC
CAAATTCACTACCACCAACCACTGTAATTTCAACTTTGATAAATTTAAATCAACCAACAC
CACCACTTGTCGATAGAGCT