VSG311
Library VS
(Link to library)
Clone ID VSG311
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14715-1
Original site URL
Representative seq. ID VSG311Z
(Link to Original site)
Representative DNA sequence
>VSG311 (VSG311Q) /CSM/VS/VSG3-A/VSG311Q.Seq.d/
XXXXXXXXXXCCGAAAAAAAAAAAAATGCAAACTGTACGTGGTGAACCAGTCATTGAAAA
TATCAGAGAACATTTAGATAAAATACCAACACCAGAAAATAGAAAATATGTGAATGATGC
CACTACATATAAATCAACACAAACATATCTTAGATTTTATGGTAGCACTGATAAAGGTGA
GATAAGATACGAAAAATCACCACAATTTCACAGAATTTTAAGAGAAAACGGTTTCTCAAT
GGATCCAGTTCAAAAAGTTTCTTTATTTAGACAAGGCAAAGTTAGAGTTGTTGGTCCACA
TCAAGTTATCCCATTAAAAGGAGAAAAATTGGATATTCCAAAATATTATTCAAATCAAGA
AATTNATTATAAAGCATATTTTGAAACCCTCAAACCAACTAAACTCACTAAATAATGTAA
ACGAATAAATATTAATAATAAAAAATACAAGATATATAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
---KKKKMQTVRGEPVIENIREHLDKIPTPENRKYVNDATTYKSTQTYLRFYGSTDKGEI
RYEKSPQFHRILRENGFSMDPVQKVSLFRQGKVRVVGPHQVIPLKGEKLDIPKYYSNQEI
XYKAYFETLKPTKLTK*ckrininnkkykiykk


Translated Amino Acid sequence (All Frames)
Frame A:
---rkkkkcklyvvnqslkiseni*ikyqhqkienm*mmplhinqhkhildfmvalikvr
*dtknhhnftef*ektvsqwiqfkkflyldkaklellvhiklsh*keknwifqniiqikk
xiikhilkpsnqlnslnnvne*iliikntryik


Frame B:
---ekkknanctw*tsh*kyqrtfr*ntntrk*kice*chyi*intnis*ilw*h**r*d
kirkittisqnfkrkrflngsssksffi*trqs*scwstssypikrrkigyskilfksrn
xl*sif*npqtn*th*im*tnky***kiqdi*k


Frame C:
---KKKKMQTVRGEPVIENIREHLDKIPTPENRKYVNDATTYKSTQTYLRFYGSTDKGEI
RYEKSPQFHRILRENGFSMDPVQKVSLFRQGKVRVVGPHQVIPLKGEKLDIPKYYSNQEI
XYKAYFETLKPTKLTK*ckrininnkkykiykk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG311 (VSG311Q) /CSM/VS/VSG3-A/VSG311Q.Seq.d/ 753 0.0
VSJ590 (VSJ590Q) /CSM/VS/VSJ5-D/VSJ590Q.Seq.d/ 739 0.0
VSI590 (VSI590Q) /CSM/VS/VSI5-D/VSI590Q.Seq.d/ 739 0.0
VSB849 (VSB849Q) /CSM/VS/VSB8-C/VSB849Q.Seq.d/ 739 0.0
VSB744 (VSB744Q) /CSM/VS/VSB7-B/VSB744Q.Seq.d/ 739 0.0
SSI411 (SSI411Q) /CSM/SS/SSI4-A/SSI411Q.Seq.d/ 731 0.0
VHJ407 (VHJ407Q) /CSM/VH/VHJ4-A/VHJ407Q.Seq.d/ 640 0.0
SSD218 (SSD218Q) /CSM/SS/SSD2-A/SSD218Q.Seq.d/ 490 e-137
VSA115 (VSA115Q) /CSM/VS/VSA1-A/VSA115Q.Seq.d/ 375 e-103
VHM662 (VHM662Q) /CSM/VH/VHM6-C/VHM662Q.Seq.d/ 36 0.45

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL731634|AL731634.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0033P05. 46 0.38 1
BZ125075|BZ125075.1 CH230-404H18.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-404H18, DNA sequence. 34 0.80 3
AC021043|AC021043.4 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence. 48 1.2 3
AP000751|AP000751.4 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-679A11. 42 1.4 3
CD723161|CD723161.1 oj18f07.y1 Human lacrimal gland, unamplified: oj Homo sapiens cDNA clone oj18f07 5', mRNA sequence. 44 1.5 1
BI493580|BI493580.1 df103a10.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2540850 5', mRNA sequence. 44 1.5 1
I26011|I26011.1 Sequence 1 from patent US 5556754. 44 1.5 1
BD226150|BD226150.1 Glaucoma therapeutics and diagnostics based on a novel human transcription factor. 44 1.5 1
AR140209|AR140209.1 Sequence 1 from patent US 6207450. 44 1.5 1
AR102796|AR102796.1 Sequence 1 from patent US 6087107. 44 1.5 1
dna update 2003. 8.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P75830) RecName: Full=Macrolide-specific efflux protein macA; F... 35 0.75
CP000970_2212(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 35 0.75
AM412317_3311(AM412317|pid:none) Clostridium botulinum A str. AT... 35 0.75
AE005174_960(AE005174|pid:none) Escherichia coli O157:H7 EDL933,... 35 0.75
CP000038_809(CP000038|pid:none) Shigella sonnei Ss046, complete ... 35 0.75
AP009240_936(AP009240|pid:none) Escherichia coli SE11 DNA, compl... 35 0.75
CP000939_3304(CP000939|pid:none) Clostridium botulinum B1 str. O... 35 0.98
CP000962_3288(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 0.98
CP000247_878(CP000247|pid:none) Escherichia coli 536, complete g... 35 0.98
CP000468_762(CP000468|pid:none) Escherichia coli APEC O1, comple... 35 0.98
protein update 2009. 3.23
PSORT

psg: 0.50 gvh: 0.10 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.03
nuc: 0.16 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for VSG311 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VSG311Z
3' end seq.
>VSG311Z.Seq
----------CCGAAAAAAAAAAAAATGCAAACTGTACGTGGTGAACCAGTCATTGAAAA
TATCAGAGAACATTTAGATAAAATACCAACACCAGAAAATAGAAAATATGTGAATGATGC
CACTACATATAAATCAACACAAACATATCTTAGATTTTATGGTAGCACTGATAAAGGTGA
GATAAGATACGAAAAATCACCACAATTTCACAGAATTTTAAGAGAAAACGGTTTCTCAAT
GGATCCAGTTCAAAAAGTTTCTTTATTTAGACAAGGCAAAGTTAGAGTTGTTGGTCCACA
TCAAGTTATCCCATTAAAAGGAGAAAAATTGGATATTCCAAAATATTATTCAAATCAAGA
AATTNATTATAAAGCATATTTTGAAACCCTCAAACCAACTAAACTCACTAAATAATGTAA
ACGAATAAATATTAATAATAAAAAATACAAGATATATAAAAAA
Length of 3' end seq. 453
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -