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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG286
Library VS
(Link to library)
Clone ID VSG286
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16209-1
Original site URL
Representative seq. ID VSG286E
(Link to Original site)
Representative DNA sequence 
>VSG286 (VSG286Q) /CSM/VS/VSG2-D/VSG286Q.Seq.d/
AGNGAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATT
AGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAA
ACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTC
TGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAG
ACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGT
AAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGC
TATCCCATGTAACAACCCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTC
GTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCG
ATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTG
CTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTTGAATTCACTCAACAACCAATTGCTGAAT
GGTCTGCTCCAGATAACTAAATNA
sequence update 2001. 3.25
Translated Amino Acid sequence 
XKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFS
GRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIA
IPCNNPW*klnclnvlviss*sfilkryhpkkhhlvcqsrslhlqry**rtrkrknrrcc
crssccr*sc*ihsttnc*mvcsr*ln
Translated Amino Acid sequence (All Frames) 
Frame A:
xeg*wslhhqscqnlgkdsiscschrcy*kps*ylsylcqtigstcrpqirqlyrchrfl
wsfhprylyqsnpikih*tktfdcc*siir*ttingsfirkypnhrsl*yhlmfrrc*yc
ypm*qpvvktqlp*csgy*lvkfyt*evpsqetppglsksisssteilmknqkkkkppll
lplqllplkllnslnnqllngllqitkx


Frame B:
XKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFS
GRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIA
IPCNNPW*klnclnvlviss*sfilkryhpkkhhlvcqsrslhlqry**rtrkrknrrcc
crssccr*sc*ihsttnc*mvcsr*ln


Frame C:
xrimvtsssilpklgkrfn*llvsslllktqlisqlslpnhwvnvpssnsptlsvpplsl
vvspqvplpiksnqnslnqdf*lllihy*innh*wklht*isqpslsvipphv*tvlill
shvttrgknsialmfwllarevlylrgtiprnttwsvkvdlfiyrdtdeepekektaava
aapvaaveaveftqqpiaewsapdn*x
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG286 (VSG286Q) /CSM/VS/VSG2-D/VSG286Q.Seq.d/                       1156   0.0
SLH669 (SLH669Q) /CSM/SL/SLH6-C/SLH669Q.Seq.d/                       1138   0.0
FC-BL17 (FC-BL17Q) /CSM/FC/FC-BL/FC-BL17Q.Seq.d/                     1138   0.0
FC-511 (FC-511Q) /CSM/CG/CG-FC/FC-511Q.Seq.d/                        1138   0.0
FC-BS24 (FC-BS24Q) /CSM/FC/FC-BS/FC-BS24Q.Seq.d/                     1108   0.0
VHH685 (VHH685Q) /CSM/VH/VHH6-D/VHH685Q.Seq.d/                       1074   0.0
VHA158 (VHA158Q) /CSM/VH/VHA1-C/VHA158Q.Seq.d/                       1068   0.0
VFN818 (VFN818Q) /CSM/VF/VFN8-A/VFN818Q.Seq.d/                        823   0.0
SSI527 (SSI527Q) /CSM/SS/SSI5-B/SSI527Q.Seq.d/                        664   0.0
VSC141 (VSC141Q) /CSM/VS/VSC1-B/VSC141Q.Seq.d/                        347   1e-94
own update 2003. 1. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG661617|BG661617.1 kx04b11.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    52   1e-11  4
BQ096846|BQ096846.1 IfHdk00487 Ictalurus furcatus head kidney cDNA library Ictalurus furcatus cDNA 5' similar to Ribosomal protein Sa (laminin receptor 1), mRNA sequence.    46   2e-11  4
CK406973|CK406973.1 AUF_IfLvr_212_m02 Ictalurus furcatus liver cDNA library Ictalurus furcatus cDNA 5' similar to laminin receptor 1, mRNA sequence.    46   3e-11  4
CK408423|CK408423.1 AUF_IfLvr_218_e18 Ictalurus furcatus liver cDNA library Ictalurus furcatus cDNA 5', mRNA sequence.    46   3e-11  4
BI744098|BI744098.1 kx55f06.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    44   9e-11  4
BG661838|BG661838.1 kx07a08.y1 Parastrongyloides trichosuri IL SL1 TOPO v2 Parastrongyloides trichosuri cDNA similar to SW:RSP4_CAEEL P46769 PROBABLE 40S RIBOSOMAL PROTEIN SA ;, mRNA sequence.    44   1e-10  4
AL113982|AL113982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    42   3e-10  3
CK424107|CK424107.1 AUF_IpSto_10_g21 Stomach cDNA library Ictalurus punctatus cDNA 5' similar to ribosomal protein Sa, mRNA sequence.    46   5e-09  4
BM438323|BM438323.1 IpLvr01076 Liver cDNA library Ictalurus punctatus cDNA 5' similar to Ribosomal protein Sa, mRNA sequence.    42   1e-07  3
AU261188|AU261188.1 Paralichthys olivaceus cDNA reverse end of clone:HKL305.    60   3e-07  2
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY550956_1(AY550956|pid:none) Sparus aurata 40S ribosomal protei...   180   4e-54
AM910988_113(AM910988|pid:none) Plasmodium knowlesi strain H chr...   168   4e-54
EF103361_1(EF103361|pid:none) Haliotis discus discus raminin rec...   177   5e-54
EU302586_1(EU302586|pid:none) Lineus viridis ribosomal protein r...   176   9e-54
BT043675_1(BT043675|pid:none) Salmo salar clone HM5_1686 ribosom...   179   2e-53
BT049047_1(BT049047|pid:none) Salmo salar clone ssal-rgb2-530-26...   179   2e-53
DQ213582_1(DQ213582|pid:none) Taeniopygia guttata clone 0058P003...   177   3e-53
AY891592_1(AY891592|pid:none) Synthetic construct Homo sapiens c...   177   4e-53
(Q4GWZ2) RecName: Full=40S ribosomal protein SA; AltName: Full=L...   177   4e-53
DQ212985_1(DQ212985|pid:none) Equus caballus laminin receptor 1 ...   177   4e-53
protein update 2009. 3.23
PSORT 

 psg: 0.83  gvh: 0.55  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSG286 is cyt
5' end seq. ID VSG286F
5' end seq. 
>VSG286F.Seq
AGNGAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATT
AGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAA
ACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTC
TGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAG
ACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGT
AAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGC
TATCCCATGTAACAACCCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTC
GTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCG
ATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACCG---------
-
Length of 5' end seq. 531
3' end seq. ID VSG286Z
3' end seq. 
>VSG286Z.Seq
----------CACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGC
TCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATT
GGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCG
TTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTT
GATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATAT
CCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCC
ATGTAACAACCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGT
TTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCGATCTCTT
CATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTGCTGCCGC
TCCAGTTGCTGCCGTTGAAGCTGTTGAATTCACTCAACAACCAATTGCTGAATGGTCTGC
TCCAGATAACTAAATNA
Length of 3' end seq. 607
Connected seq. ID VSG286P
Connected seq. 
>VSG286P.Seq
AGNGAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATT
AGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAA
ACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTC
TGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAG
ACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGT
AAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGC
TATCCCATGTAACAACCCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTC
GTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCG
ATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACCG---------
-CACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATTAGCTGCTCGTGTCAT
CGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAAACCATTGGGTCAACG
TGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTCTGGTCGTTTCACCCC
AGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAGACTTTTGATTGTTGC
TGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGTAAATATCCCAACCAT
CGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGCTATCCCATGTAACAA
CCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTCGTGAAGTTTTATACTT
AAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCGATCTCTTCATCTACAG
AGATACTGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTGCTGCCGCTCCAGTTGC
TGCCGTTGAAGCTGTTGAATTCACTCAACAACCAATTGCTGAATGGTCTGCTCCAGATAA
CTAAATNA
Length of connected seq. 1138
Full length Seq ID VSG286E
Full length Seq. 
>VSG286E.Seq
AGNGAAGGATAATGGTCACTTCATCATCAATCTTGCCAAAACTTGGGAAAAGATTCAATT
AGCTGCTCGTGTCATCGTTGCTATTGAAAACCCAGCTGATATCTCAGTTATCTCTGCCAA
ACCATTGGGTCAACGTGCCGTCCTCAAATTCGCCAACTTTATCGGTGCCACCGCTTTCTC
TGGTCGTTTCACCCCAGGTACCTTTACCAATCAAATCCAATCAAAATTCACTGAACCAAG
ACTTTTGATTGTTGCTGATCCATTATTAGATAAACAACCATTAATGGAAGCTTCATACGT
AAATATCCCAACCATCGCTCTCTGTGATACCACCTCATGTTTAGACGGTGTTGATATTGC
TATCCCATGTAACAACCCGTGGTAAAAACTCAATTGCCTTAATGTTCTGGTTATTAGCTC
GTGAAGTTTTATACTTAAGAGGTACCATCCCAAGAAACACCACCTGGTCTGTCAAAGTCG
ATCTCTTCATCTACAGAGATACTGATGAAGAACCAGAAAAAGAAAAAACCGCCGCTGTTG
CTGCCGCTCCAGTTGCTGCCGTTGAAGCTGTTGAATTCACTCAACAACCAATTGCTGAAT
GGTCTGCTCCAGATAACTAAATNA
Length of full length seq. 624