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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG252
Library VS
(Link to library)
Clone ID VSG252
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16490-1
Original site URL
Representative seq. ID VSG252P
(Link to Original site)
Representative DNA sequence 
>VSG252 (VSG252Q) /CSM/VS/VSG2-C/VSG252Q.Seq.d/
CAATAATTCAAAATTCATATTAAAATGTTTGGTTTTATATATAGAGACCCTTCTCCAGCA
CCTCAAGGTAAAATTAGAGATGGTTCAAAAGACCCAAAAACACCAGGTGGTGGTGGTGGT
GGTGGTGGTGGTATTTCTCCAAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATG
TAGTTTTAACTTTATTTTGTTACAATTCGATAATTATTATTAAATCAAATAAAATTATTA
TATTTGGTTCATCTTCTATTTTAAAAAAAAAAXXXXXXXXXXCAATAATTCAAATTCATA
TTAAAATGTTTGGTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAG
ATGGTTCAAAAGACCCAAAAACACCAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTCTC
CAAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTG
TTACAATTCGATAATTATTATTAAATCAAATAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
iiqnsy*nvwfyi*rpfsstsr*n*rwfkrpkntrwwwwwwwwyfskwwcspww*RILNV
VLTLFCYNSIIIIKSNKIIIFGSSSILKKK---

---IIQIHIKMFGFIYRDPSPAPQGKIRDGSKDPKTPGGGGGGGGGISPNGGAPLGGKGF
SM*f*lyfvtir*lllnqik
Translated Amino Acid sequence (All Frames) 
Frame A:
q*fkihikmfgfiyrdpspapqgkirdgskdpktpgggggggggispnggaplggkgfsm
*f*lyfvtir*lllnqikllylvhllf*kk---

---q*fkfilkclvlyietllqhlkvklemvqktqkhqvvvvvvvvvflqmvvlplvvkd
sqcsfnfillqfdnyy*ik*

Frame B:
nnskfilkclvlyietllqhlkvklemvqktqkhqvvvvvvvvvflqmvvlplvvkdsqc
sfnfillqfdnyy*ik*nyyiwfifyfkkk---

---nnsnsy*nvwfyi*rpfsstsr*n*rwfkrpkntrwwwwwwwwyfskwwcspww*ri
lnvvltlfcynsiiiiksnk

Frame C:
iiqnsy*nvwfyi*rpfsstsr*n*rwfkrpkntrwwwwwwwwyfskwwcspww*RILNV
VLTLFCYNSIIIIKSNKIIIFGSSSILKKK---

---IIQIHIKMFGFIYRDPSPAPQGKIRDGSKDPKTPGGGGGGGGGISPNGGAPLGGKGF
SM*f*lyfvtir*lllnqik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK358 (VSK358Q) /CSM/VS/VSK3-C/VSK358Q.Seq.d/                        258   7e-68
VSK330 (VSK330Q) /CSM/VS/VSK3-B/VSK330Q.Seq.d/                        258   7e-68
VSJ152 (VSJ152Q) /CSM/VS/VSJ1-C/VSJ152Q.Seq.d/                        258   7e-68
VSI808 (VSI808Q) /CSM/VS/VSI8-A/VSI808Q.Seq.d/                        258   7e-68
VSI734 (VSI734Q) /CSM/VS/VSI7-B/VSI734Q.Seq.d/                        258   7e-68
VSH249 (VSH249Q) /CSM/VS/VSH2-C/VSH249Q.Seq.d/                        258   7e-68
VSG802 (VSG802Q) /CSM/VS/VSG8-A/VSG802Q.Seq.d/                        258   7e-68
VSG716 (VSG716Q) /CSM/VS/VSG7-A/VSG716Q.Seq.d/                        258   7e-68
VSG430 (VSG430Q) /CSM/VS/VSG4-B/VSG430Q.Seq.d/                        258   7e-68
VSG252 (VSG252Q) /CSM/VS/VSG2-C/VSG252Q.Seq.d/                        258   7e-68
own update 2001.11.21
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014156|AE014156.1 Streptococcus pyogenes MGAS315, section 21 of 37 of the complete genome.    42  0.002  3
AE014082|AE014082.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 7 of 57 of the complete genome.    38  0.003  4
AC113197|AC113197.2 Mus musculus clone RP23-198M1, LOW-PASS SEQUENCE SAMPLING.    36  0.009  3
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    38  0.016  8
AF402141|AF402141.1 Schizophyllum commune mitochondrial DNA, complete genome.    44  0.019  3
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    32  0.054  8
BH952544|BH952544.1 odh02d06.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    38  0.080  2
BX323835|BX323835.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.17  4
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34  0.20  9
AC138324|AC138324.1 Homo sapiens chromosome 8 clone RP13-974O7 map 8, LOW-PASS SEQUENCE SAMPLING.    36  0.21  3
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(B0G125) RecName: Full=Uncharacterized protein DDB_G0295473;           62   1e-08
protein update 2009. 3.22
PSORT 

 psg: 0.93  gvh: 0.42  alm: 0.26  top: 0.60  tms: 0.07  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VSG252 is cyt
5' end seq. ID VSG252F
5' end seq. 
>VSG252F.Seq
CAATAATTCAAAATTCATATTAAAATGTTTGGTTTTATATATAGAGACCCTTCTCCAGCA
CCTCAAGGTAAAATTAGAGATGGTTCAAAAGACCCAAAAACACCAGGTGGTGGTGGTGGT
GGTGGTGGTGGTATTTCTCCAAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATG
TAGTTTTAACTTTATTTTGTTACAATTCGATAATTATTATTAAATCAAATAAAATTATTA
TATTTGGTTCATCTTCTATTTTAAAAAAAAAA----------
Length of 5' end seq. 272
3' end seq. ID VSG252Z
3' end seq. 
>VSG252Z.Seq
----------CAATAATTCAAATTCATATTAAAATGTTTGGTTTTATATATAGAGACCCT
TCTCCAGCACCTCAAGGTAAAATTAGAGATGGTTCAAAAGACCCAAAAACACCAGGTGGT
GGTGGTGGTGGTGGTGGTGGTATTTCTCCAAATGGTGGTGCTCCCCTTGGTGGTAAAGGA
TTCTCAATGTAGTTTTAACTTTATTTTGTTACAATTCGATAATTATTATTAAATCAAATA
AAA
Length of 3' end seq. 233
Connected seq. ID VSG252P
Connected seq. 
>VSG252P.Seq
CAATAATTCAAAATTCATATTAAAATGTTTGGTTTTATATATAGAGACCCTTCTCCAGCA
CCTCAAGGTAAAATTAGAGATGGTTCAAAAGACCCAAAAACACCAGGTGGTGGTGGTGGT
GGTGGTGGTGGTATTTCTCCAAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATG
TAGTTTTAACTTTATTTTGTTACAATTCGATAATTATTATTAAATCAAATAAAATTATTA
TATTTGGTTCATCTTCTATTTTAAAAAAAAAA----------CAATAATTCAAATTCATA
TTAAAATGTTTGGTTTTATATATAGAGACCCTTCTCCAGCACCTCAAGGTAAAATTAGAG
ATGGTTCAAAAGACCCAAAAACACCAGGTGGTGGTGGTGGTGGTGGTGGTGGTATTTCTC
CAAATGGTGGTGCTCCCCTTGGTGGTAAAGGATTCTCAATGTAGTTTTAACTTTATTTTG
TTACAATTCGATAATTATTATTAAATCAAATAAAA
Length of connected seq. 505
Full length Seq ID -
Full length Seq. -
Length of full length seq. -