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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG249
Library VS
(Link to library)
Clone ID VSG249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VSG249P
(Link to Original site)
Representative DNA sequence 
>VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/
CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTA
CCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTA
CCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGA
AATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTG
GTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATA
TATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAA
ATAAAAAAAAAAXXXXXXXXXXCAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTC
GGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAG
ATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGA
CGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCT
TGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAG
TTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACGGTTT
TAAAAAATAAATATATTTAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
qfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsg
nvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KINIFK
IKKK---

---VSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVG
IWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytrf*kini
fk
Translated Amino Acid sequence (All Frames) 
Frame A:
qfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhplvsg
nvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KINIFK
IKKK---

---qfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhpl
vsgnvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihgfkk*i
ylk

Frame B:
sfihngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirwyle
m*rlp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*iylk
*kk---

---sfihngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfirw
ylem*rlp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytvlknky
i*

Frame C:
vsytmakrtkkvgvvgkygtrygaslrkqvkkmeitqhgtytcsfcgkdavrrssvgiwk
cngcrkvlaggawtmstaagatvrstirrlrelnn*tiyi*nkinqdqytlvlknkyi*n
kkk---

---VSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVG
IWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*nkinqdqytrf*kini
fk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH830 (VSH830Q) /CSM/VS/VSH8-B/VSH830Q.Seq.d/                        714   0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        714   0.0
VSI440 (VSI440Q) /CSM/VS/VSI4-B/VSI440Q.Seq.d/                        708   0.0
VSE566 (VSE566Q) /CSM/VS/VSE5-C/VSE566Q.Seq.d/                        700   0.0
VSE459 (VSE459Q) /CSM/VS/VSE4-C/VSE459Q.Seq.d/                        700   0.0
VSE429 (VSE429Q) /CSM/VS/VSE4-B/VSE429Q.Seq.d/                        700   0.0
VHA808 (VHA808Q) /CSM/VH/VHA8-A/VHA808Q.Seq.d/                        700   0.0
SSH726 (SSH726Q) /CSM/SS/SSH7-B/SSH726Q.Seq.d/                        698   0.0
VSB771 (VSB771Q) /CSM/VS/VSB7-C/VSB771Q.Seq.d/                        682   0.0
VHA861 (VHA861Q) /CSM/VH/VHA8-C/VHA861Q.Seq.d/                        682   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL112083|AL112083.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL112069|AL112069.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL111042|AL111042.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    84  2e-14  2
AL114982|AL114982.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    80  4e-13  2
AL110769|AL110769.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    78  1e-12  2
BM027100|BM027100.1 GIT0000389 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    84  3e-12  1
BI323490|BI323490.1 kt71h07.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:R37A_OSTOS O61598 60S RIBOSOMAL PROTEIN L37A. ;, mRNA sequence.    42  9e-11  4
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   184   2e-45
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   149   1e-34
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   148   2e-34
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   147   4e-34
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   146   5e-34
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   146   7e-34
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   146   7e-34
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   145   9e-34
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   145   1e-33
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   145   1e-33
protein update 2009. 3.22
PSORT 

 psg: 0.63  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VSG249 is nuc
5' end seq. ID VSG249F
5' end seq. 
>VSG249F.Seq
CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTA
CCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTA
CCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGA
AATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTG
GTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATA
TATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAA
ATAAAAAAAAAA----------
Length of 5' end seq. 372
3' end seq. ID VSG249Z
3' end seq. 
>VSG249Z.Seq
----------CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGT
AAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACC
CAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTT
GGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCA
ACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAA
ACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACGGTTTTAAAAAATAAAT
ATATTTAAAA
Length of 3' end seq. 360
Connected seq. ID VSG249P
Connected seq. 
>VSG249P.Seq
CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTA
CCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCACCCAACACGGTA
CCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCGTTGGTATCTGGA
AATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTG
GTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACTAAACCATTTATA
TATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATAAATATATTTAAA
ATAAAAAAAAAA----------CAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTC
GGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAG
ATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGA
CGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCT
TGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAG
TTAAATAACTAAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACGGTTT
TAAAAAATAAATATATTTAAAA
Length of connected seq. 732
Full length Seq ID -
Full length Seq. -
Length of full length seq. -