VSG244
Library VS
(Link to library)
Clone ID VSG244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID VSG244E
(Link to Original site)
Representative DNA sequence
>VSG244 (VSG244Q) /CSM/VS/VSG2-B/VSG244Q.Seq.d/
GTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGT
AAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACT
CTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAAT
GTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAA
GGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCA
AATTGGCACTNTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAAC
AAAGTTGATGTTAAAGATNGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATAC
AATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTC
TGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTNNNNNNCAACAACCNACCTTN
AAATTACCAGAAACCGNTCTCGATTCCNACTTAATGNGNTTANATGAAAAANAAGTCGCT
GATGCTGCTGCCCNCCCNTTACCNGA
sequence update 2001. 3.25
Translated Amino Acid sequence
VKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFN
VWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHXDLTRVCENIPIVLCGN
KVDVKDXKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTXXQQPTX
KLPETXLDSXLMXLXEKXVADAAAXPLP


Translated Amino Acid sequence (All Frames)
Frame A:
VKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIHFN
VWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHXDLTRVCENIPIVLCGN
KVDVKDXKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTXXQQPTX
KLPETXLDSXLMXLXEKXVADAAAXPLP


Frame B:
lkwqkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkstsm
ygiplvkknsvv*emviifkvivpllclmshpvfhtkmfqigtxi*pefvktsqsfyvvt
klmlkxvksnhpklfsivdtiyhtmmfqpnqitisknhssg*hqnssvtrlslxxnnxpx
nyqkpxsipt*xxxmkxkslmllpxxyx


Frame C:
*ngrkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*nplqc
mgyrwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw*q
s*c*rx*sqtipncfps*iqfiil*cfsqiklqfrktirlvniktpr*qgchxxxttxlx
itrnrsrfxlnxxx*kxsr*cccppxtx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG244 (VSG244Q) /CSM/VS/VSG2-B/VSG244Q.Seq.d/ 1114 0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/ 1114 0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/ 1114 0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/ 1100 0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/ 1090 0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/ 1090 0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/ 1076 0.0
VSG164 (VSG164Q) /CSM/VS/VSG1-C/VSG164Q.Seq.d/ 1049 0.0
VSI638 (VSI638Q) /CSM/VS/VSI6-B/VSI638Q.Seq.d/ 1037 0.0
AHG307 (AHG307Q) /CSM/AH/AHG3-A/AHG307Q.Seq.d/ 1023 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds. 1017 0.0 2
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728. 111 8e-54 4
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds. 111 9e-52 3
CA758831|AAF60289.1, mRNA sequence. 74 3e-49 5
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
BQ452295|BQ452295.1 PfESToaa94h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence. 92 4e-40 5
dna update 2004. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 357 1e-97
(P32836) RecName: Full=GTP-binding nuclear protein GSP2/CNR2; &... 258 7e-68
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 258 9e-68
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 258 9e-68
CR382121_184(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 258 1e-67
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam... 257 2e-67
(Q74ZA9) RecName: Full=GTP-binding nuclear protein GSP1/Ran; &A... 257 2e-67
EF519305_1(EF519305|pid:none) Penicillium marneffei small GTPase... 256 3e-67
(Q6FR65) RecName: Full=GTP-binding nuclear protein GSP1/Ran; &C... 256 5e-67
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:... 255 8e-67
protein update 2009. 3.22
PSORT

psg: 0.80 gvh: 0.35 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for VSG244 is cyt

5' end seq. ID VSG244F
5' end seq.
>VSG244F.Seq
GTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGT
AAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACT
CTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAAT
GTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAA
GGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCA
AATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAAC
AAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATAC
AATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTC
TGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGT----------
Length of 5' end seq. 525
3' end seq. ID VSG244Z
3' end seq.
>VSG244Z.Seq
----------ACAAAAATGTTCCAAATTGGCNCTTTGATTTAACCANAGTTTGTGAAAAC
ATCCCNATNGTTTTATGTGGTAACAAAGTTNATGTTAAANATTGTAAAGTCAAACCATCC
CAAATTGTTTTCCATNGTAGATACAATTTNTCATACTATGATGTTTCAGCCAAATCAAAT
TACAATTTNGAAAAACCNTTNGTNTGGTTAACATCAAAACNCCNCGGNAACAAGGCTGTC
NCTNTCGTTCAACAACCNACCTTNAAATTACCAGAAACCGNTCTCGATTCCNACTTAATG
NGNTTANATGAAAAANAAGTCGCTGATGCTGCTGCCCNCCCNTTACCNGA
Length of 3' end seq. 340
Connected seq. ID VSG244P
Connected seq.
>VSG244P.Seq
GTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGT
AAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACT
CTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAAT
GTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAA
GGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCA
AATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAAC
AAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATAC
AATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTC
TGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTTCTCGT----------ACAAA
AATGTTCCAAATTGGCNCTTTGATTTAACCANAGTTTGTGAAAACATCCCNATNGTTTTA
TGTGGTAACAAAGTTNATGTTAAANATTGTAAAGTCAAACCATCCCAAATTGTTTTCCAT
NGTAGATACAATTTNTCATACTATGATGTTTCAGCCAAATCAAATTACAATTTNGAAAAA
CCNTTNGTNTGGTTAACATCAAAACNCCNCGGNAACAAGGCTGTCNCTNTCGTTCAACAA
CCNACCTTNAAATTACCAGAAACCGNTCTCGATTCCNACTTAATGNGNTTANATGAAAAA
NAAGTCGCTGATGCTGCTGCCCNCCCNTTACCNGA
Length of connected seq. 865
Full length Seq ID VSG244E
Full length Seq.
>VSG244E.Seq
GTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGT
AAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACT
CTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAAT
GTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAA
GGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCA
AATTGGCACTNTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAAC
AAAGTTGATGTTAAAGATNGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATAC
AATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTCGTC
TGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTNNNNNNCAACAACCNACCTTN
AAATTACCAGAAACCGNTCTCGATTCCNACTTAATGNGNTTANATGAAAAANAAGTCGCT
GATGCTGCTGCCCNCCCNTTACCNGA
Length of full length seq. 626