VSG228
Library VS
(Link to library)
Clone ID VSG228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06783-1
Original site URL
Representative seq. ID VSG228P
(Link to Original site)
Representative DNA sequence
>VSG228 (VSG228Q) /CSM/VS/VSG2-B/VSG228Q.Seq.d/
ATTAAATCTCATTAATAGATCAAAGAGATTAAATATTCAAAATTTTTCAAAAGTAACAAC
AACAAACTTAATATTGAGGAATAGTATAAATAATAGTATAATTTTCCCCCCCTCAAATAA
TGATAATTCAATATTATCATTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGA
TAATCCAGTTGATAATAATAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAAC
ATATTCAGAAAGACATGAACCAAAATTAAAGAATGATTTTAAAGAATTTGGTTTAAGTAA
TGAATTGATTGAATCAATTAAAGAGAATAATTGGGAAAAACCAACAGATGTTCAAAAACA
AGTTATACCATTAATATTTAAAGGTAGAAATACAGTTTTCTCATCAGTTACAGGTAGTGG
TAAAACTGGTGCTTACCTCTTACCTTTTATACAAATTTTAACAACTTTTAAAAGGAAATA
AATTAAATTATTTAAAAAAACXXXXXXXXXXCCATGCGTCCGATTAAATCTCATTAATAG
ATCAAAGAGATTAAATATTCAAAATTTTTCAAAAGTAACAACAACAAACTTAATATTGAG
GAATAGTATAAATAATAGTATAATTTTCCCCCCCTCAAATAATGATAATTCAATATTATC
ATTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGATAATCCAGTTGATAATAA
TAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAACATATTCAGAAAGACATGA
ACCAAAATTAAAGAATGATTTTAAAGAATTTGGTTTAAGTAATGAATTGATTGAATCAAT
TAAAGAGAATAATTGGGAAAAACCAACAGATGTTCAAAAACAAGTTATACCATTAATATT
TAAAGGTAGAAATACAGTTTTCTCATCAGTTACAGGTAGTGGTAAAACTGGTGCTTACCT
CTTACCTTTTATACAAATTTTAACAACTTTTAAAAGAAATAAATTAAATTATTTAAAAAA
ACAAAAACAAGACAAAGAGAATGGCCAAATTGAAAATGAATTTGATGAAAATTATGAATT
ATTTAATGAAGAAGATTATGGTGATAAACCATTNAAAAGAAAATTGTAAAAAATAATAAA
TTTAAAAAAGAAAAATTNAAAAATTGAAGAAGC
sequence update 2001. 3.22
Translated Amino Acid sequence
*islidqrd*ifkifqk*qqqt*y*giv*iiv*fsppqimiiqyyh*itqhqqqepkeki
iqliiiikelerlkdqylkhiqkdmnqn*rmilknlv*vmn*lnqlkriigknqqmfknk
lyh*ylkveiqfshqlqvvvklvltsyllykf*QLLKGNKLNYLKK---

---PCVRLNLINRSKRLNIQNFSKVTTTNLILRNSINNSIIFPPSNNDNSILSLNYSTST
TRTKRKDNPVDNNNKRIGTIKRPIFKTYSERHEPKLKNDFKEFGLSNELIESIKENNWEK
PTDVQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFIQILTTFKRNKLNYLKKQKQDKEN
GQIENEFDENYELFNEEDYGDKPXKRKL*kiinlkkknxkiee


Translated Amino Acid sequence (All Frames)
Frame A:
iksh**ikeikyskffksnnnklniee*yk**ynfpplk***fniiikllninnknqkkr
*ss*****knwnd*ktni*nifrkt*tkike*f*riwfk**id*in*re*lgktnrcskt
sytini*r*kysflisyr*w*nwclpltfytnfnnf*kein*ii*kn---

---PCVRLNLINRSKRLNIQNFSKVTTTNLILRNSINNSIIFPPSNNDNSILSLNYSTST
TRTKRKDNPVDNNNKRIGTIKRPIFKTYSERHEPKLKNDFKEFGLSNELIESIKENNWEK
PTDVQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFIQILTTFKRNKLNYLKKQKQDKEN
GQIENEFDENYELFNEEDYGDKPXKRKL*kiinlkkknxkiee

Frame B:
lnlinrskrlniqnfskvtttnlilrnsinnsiifppsnndnsilslnyststtrtkrkd
npvdnnnkrigtikrpifktyserhepklkndfkefglsneliesikennwekptdvqkq
viplifkgrntvfssvtgsgktgayllpfiqilttfkrk*iklfkk---

---hasd*islidqrd*ifkifqk*qqqt*y*giv*iiv*fsppqimiiqyyh*itqhqq
qepkekiiqliiiikelerlkdqylkhiqkdmnqn*rmilknlv*vmn*lnqlkriigkn
qqmfknklyh*ylkveiqfshqlqvvvklvltsyllykf*qllkein*ii*knknktkrm
aklkmnlmkimnylmkkimvinhxkenckk**i*krkixklkk

Frame C:
*islidqrd*ifkifqk*qqqt*y*giv*iiv*fsppqimiiqyyh*itqhqqqepkeki
iqliiiikelerlkdqylkhiqkdmnqn*rmilknlv*vmn*lnqlkriigknqqmfknk
lyh*ylkveiqfshqlqvvvklvltsyllykf*QLLKGNKLNYLKK---

---mrpiksh**ikeikyskffksnnnklniee*yk**ynfpplk***fniiikllninn
knqkkr*ss*****knwnd*ktni*nifrkt*tkike*f*riwfk**id*in*re*lgkt
nrcsktsytini*r*kysflisyr*w*nwclpltfytnfnnf*kk*iklfkktktrqrew
pn*k*i**kl*ii**rrlw**tixkkivknnkfkkekxkn*rs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG228 (VSG228Q) /CSM/VS/VSG2-B/VSG228Q.Seq.d/ 955 0.0
VFM133 (VFM133Q) /CSM/VF/VFM1-B/VFM133Q.Seq.d/ 42 0.019
SLB457 (SLB457Q) /CSM/SL/SLB4-C/SLB457Q.Seq.d/ 42 0.019
FC-BQ03 (FC-BQ03Q) /CSM/FC/FC-BQ/FC-BQ03Q.Seq.d/ 42 0.019
FC-BP20 (FC-BP20Q) /CSM/FC/FC-BP/FC-BP20Q.Seq.d/ 42 0.019
FC-BN11 (FC-BN11Q) /CSM/FC/FC-BN/FC-BN11Q.Seq.d/ 42 0.019
FC-536 (FC-536Q) /CSM/CG/CG-FC/FC-536Q.Seq.d/ 42 0.019
VFK517 (VFK517Q) /CSM/VF/VFK5-A/VFK517Q.Seq.d/ 40 0.075
SSE737 (SSE737Q) /CSM/SS/SSE7-B/SSE737Q.Seq.d/ 40 0.075
SSD479 (SSD479Q) /CSM/SS/SSD4-D/SSD479Q.Seq.d/ 40 0.075

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 1e-08 11
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 36 6e-08 10
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 1e-07 10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 5e-07 9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 36 1e-06 11
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 40 1e-06 12
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence. 46 2e-06 7
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 34 2e-06 9
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 5e-06 11
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence. 38 5e-06 10
dna update 2003. 8.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE015929_1245(AE015929|pid:none) Staphylococcus epidermidis ATCC... 70 1e-10
(Q90WU3) RecName: Full=ATP-dependent RNA helicase DDX1; ... 68 7e-10
CP000513_965(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 67 9e-10
AP009351_1461(AP009351|pid:none) Staphylococcus aureus subsp. au... 67 1e-09
AJ938182_1430(AJ938182|pid:none) Staphylococcus aureus RF122 com... 67 1e-09
AL049482_8(AL049482|pid:none) Arabidopsis thaliana DNA chromosom... 66 2e-09
AK248109_1(AK248109|pid:none) Dugesia japonica mRNA for DEAD/H b... 66 2e-09
AY915580_1(AY915580|pid:none) Schistosoma japonicum SJCHGC07781 ... 66 3e-09
BA000011_1326(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 65 3e-09
CR954246_486(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 65 3e-09
protein update 2009. 3.22
PSORT

psg: 0.59 gvh: 0.24 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.13
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
28.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VSG228 is mit

5' end seq. ID VSG228F
5' end seq.
>VSG228F.Seq
ATTAAATCTCATTAATAGATCAAAGAGATTAAATATTCAAAATTTTTCAAAAGTAACAAC
AACAAACTTAATATTGAGGAATAGTATAAATAATAGTATAATTTTCCCCCCCTCAAATAA
TGATAATTCAATATTATCATTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGA
TAATCCAGTTGATAATAATAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAAC
ATATTCAGAAAGACATGAACCAAAATTAAAGAATGATTTTAAAGAATTTGGTTTAAGTAA
TGAATTGATTGAATCAATTAAAGAGAATAATTGGGAAAAACCAACAGATGTTCAAAAACA
AGTTATACCATTAATATTTAAAGGTAGAAATACAGTTTTCTCATCAGTTACAGGTAGTGG
TAAAACTGGTGCTTACCTCTTACCTTTTATACAAATTTTAACAACTTTTAAAAGGAAATA
AATTAAATTATTTAAAAAAAC----------
Length of 5' end seq. 501
3' end seq. ID VSG228Z
3' end seq.
>VSG228Z.Seq
----------CCATGCGTCCGATTAAATCTCATTAATAGATCAAAGAGATTAAATATTCA
AAATTTTTCAAAAGTAACAACAACAAACTTAATATTGAGGAATAGTATAAATAATAGTAT
AATTTTCCCCCCCTCAAATAATGATAATTCAATATTATCATTAAATTACTCAACATCAAC
AACAAGAACCAAAAGAAAAGATAATCCAGTTGATAATAATAATAAAAGAATTGGAACGAT
TAAAAGACCAATATTTAAAACATATTCAGAAAGACATGAACCAAAATTAAAGAATGATTT
TAAAGAATTTGGTTTAAGTAATGAATTGATTGAATCAATTAAAGAGAATAATTGGGAAAA
ACCAACAGATGTTCAAAAACAAGTTATACCATTAATATTTAAAGGTAGAAATACAGTTTT
CTCATCAGTTACAGGTAGTGGTAAAACTGGTGCTTACCTCTTACCTTTTATACAAATTTT
AACAACTTTTAAAAGAAATAAATTAAATTATTTAAAAAAACAAAAACAAGACAAAGAGAA
TGGCCAAATTGAAAATGAATTTGATGAAAATTATGAATTATTTAATGAAGAAGATTATGG
TGATAAACCATTNAAAAGAAAATTGTAAAAAATAATAAATTTAAAAAAGAAAAATTNAAA
AATTGAAGAAGC
Length of 3' end seq. 662
Connected seq. ID VSG228P
Connected seq.
>VSG228P.Seq
ATTAAATCTCATTAATAGATCAAAGAGATTAAATATTCAAAATTTTTCAAAAGTAACAAC
AACAAACTTAATATTGAGGAATAGTATAAATAATAGTATAATTTTCCCCCCCTCAAATAA
TGATAATTCAATATTATCATTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGA
TAATCCAGTTGATAATAATAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAAC
ATATTCAGAAAGACATGAACCAAAATTAAAGAATGATTTTAAAGAATTTGGTTTAAGTAA
TGAATTGATTGAATCAATTAAAGAGAATAATTGGGAAAAACCAACAGATGTTCAAAAACA
AGTTATACCATTAATATTTAAAGGTAGAAATACAGTTTTCTCATCAGTTACAGGTAGTGG
TAAAACTGGTGCTTACCTCTTACCTTTTATACAAATTTTAACAACTTTTAAAAGGAAATA
AATTAAATTATTTAAAAAAAC----------CCATGCGTCCGATTAAATCTCATTAATAG
ATCAAAGAGATTAAATATTCAAAATTTTTCAAAAGTAACAACAACAAACTTAATATTGAG
GAATAGTATAAATAATAGTATAATTTTCCCCCCCTCAAATAATGATAATTCAATATTATC
ATTAAATTACTCAACATCAACAACAAGAACCAAAAGAAAAGATAATCCAGTTGATAATAA
TAATAAAAGAATTGGAACGATTAAAAGACCAATATTTAAAACATATTCAGAAAGACATGA
ACCAAAATTAAAGAATGATTTTAAAGAATTTGGTTTAAGTAATGAATTGATTGAATCAAT
TAAAGAGAATAATTGGGAAAAACCAACAGATGTTCAAAAACAAGTTATACCATTAATATT
TAAAGGTAGAAATACAGTTTTCTCATCAGTTACAGGTAGTGGTAAAACTGGTGCTTACCT
CTTACCTTTTATACAAATTTTAACAACTTTTAAAAGAAATAAATTAAATTATTTAAAAAA
ACAAAAACAAGACAAAGAGAATGGCCAAATTGAAAATGAATTTGATGAAAATTATGAATT
ATTTAATGAAGAAGATTATGGTGATAAACCATTNAAAAGAAAATTGTAAAAAATAATAAA
TTTAAAAAAGAAAAATTNAAAAATTGAAGAAGC
Length of connected seq. 1163
Full length Seq ID -
Full length Seq. -
Length of full length seq. -