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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG226
Library VS
(Link to library)
Clone ID VSG226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09660-1
Original site URL
Representative seq. ID VSG226P
(Link to Original site)
Representative DNA sequence 
>VSG226 (VSG226Q) /CSM/VS/VSG2-B/VSG226Q.Seq.d/
GTTCTAGATCGCGXXXXXXXXXXATTGGAAGATTTGAACCTGGAAGAGTATGTTTACCAT
CGATTTCTCTTAAGGCATTTTCAGATTCATCTCTGGTTGAGTATTTAATGAAACCATAAC
CCTTTGGTTTACCATCCTTTTCTCTAACAATGTTCAAATCTTCAATAATACCATAGTTTC
CAAACAAAATACGAATTTGATCTTCATCGGAGGTACCTAACATACCAATGAATAATTTTC
TTTCCATCTTTTCAATTTCATTATCTGAATATTTAACTTGTAATGGTTTATTCATATTTT
CGAGGAAAGTTCCACTTTCGTTTGTGGTATTTAATGCATTATCAGCTTCTTCTTTAGTTG
AGAATGTAATAAAAGCGCAACCTTTTGANACATTTGTTCTTTTATCTTTAANCATAGTAA
TATCGAGGATANTACCAAATTTATTAAAGATTTGAGAGACNCCTTCTTCATTCATTGAAG
ATGGAATATGGCCAACGAAAACAGTGAAACCACCGAGTTGANTTGAGATTGTTGTTGTTG
NTGTTGTTGGAGCGATTGCAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
VLDR---

---IGRFEPGRVCLPSISLKAFSDSSLVEYLMKP*pfglpsfsltmfkssiip*fpnkir
i*sssevpnipmnnflsifsislseyltcnglfifsrkvplsfvvfnalsasslvenvik
aqpfxtfvllslxivisrixpnllki*etpssfiedgiwptktvkpps*xeivvvxvvga
ia
Translated Amino Acid sequence (All Frames) 
Frame A:
VLDR---

---IGRFEPGRVCLPSISLKAFSDSSLVEYLMKP*pfglpsfsltmfkssiip*fpnkir
i*sssevpnipmnnflsifsislseyltcnglfifsrkvplsfvvfnalsasslvenvik
aqpfxtfvllslxivisrixpnllki*etpssfiedgiwptktvkpps*xeivvvxvvga
ia

Frame B:
f*ia---

---ledlnleeyvyhrfllrhfqihlwlsi**nhnplvyhpfl*qcsnlq*yhsfqtkye
fdlhrryltyq*iiffpsfqfhylni*lvmvysyfrgkfhfrlwylmhyqlll*lrm**k
rnllxhlffyl*x**yrgxyqiy*rferxllhslkmeygqrkq*nhrvxlrllllxller
lh

Frame C:
srs---

---wki*twksmftidfs*gifrfisg*vfnetitlwftilfsnnvqifnntivskqntn
lifiggt*htne*fsfhlfnfii*ifnl*wfihifeesstfvcgi*ciisfffs*ecnks
atf*xicsfifxhsniedxtkfikdlrdxffih*rwnmanensettelx*dcccxccwsd
c
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG226 (VSG226Q) /CSM/VS/VSG2-B/VSG226Q.Seq.d/                        971   0.0
VFI818 (VFI818Q) /CSM/VF/VFI8-A/VFI818Q.Seq.d/                        262   5e-69
VFJ840 (VFJ840Q) /CSM/VF/VFJ8-B/VFJ840Q.Seq.d/                        222   4e-57
VFL496 (VFL496Q) /CSM/VF/VFL4-D/VFL496Q.Seq.d/                        111   1e-23
VFL435 (VFL435Q) /CSM/VF/VFL4-B/VFL435Q.Seq.d/                         78   2e-13
VFL443 (VFL443Q) /CSM/VF/VFL4-B/VFL443Q.Seq.d/                         62   1e-08
SLC857 (SLC857Q) /CSM/SL/SLC8-C/SLC857Q.Seq.d/                         56   6e-07
AFN136 (AFN136Q) /CSM/AF/AFN1-B/AFN136Q.Seq.d/                         46   6e-04
VFK165 (VFK165Q) /CSM/VF/VFK1-C/VFK165Q.Seq.d/                         42   0.009
VFG316 (VFG316Q) /CSM/VF/VFG3-A/VFG316Q.Seq.d/                         38   0.14
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CF181981|CF181981.1 ISO4E9F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to hypothetical protein 3D7, mRNA sequence.    42  0.27  2
CF182017|CF182017.1 ISO5H11R Iso cDNA Isotricha sp. BBF-2003 cDNA similar to hypothetical protein 3D7, mRNA sequence.    42  0.30  2
AB073701|AB073701.1 Borrelia duttonii plasmid DNA, complete sequence, strain:Ly.    32  0.62  5
AC139459|AC139459.1 Homo sapiens chromosome 5 clone RP11-1069F21, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  0.89  4
AC139457|AC139457.1 Homo sapiens chromosome 5 clone RP11-1042H2, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  1.2  2
AC140719|AC140719.1 Homo sapiens chromosome 16 clone XXfos-89271H3, WORKING DRAFT SEQUENCE, 55 unordered pieces.    44  1.8  1
AC140134|AC140134.1 Homo sapiens chromosome 5 clone RP11-1319K7, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44  1.8  1
AC139808|AC139808.1 Homo sapiens chromosome 5 clone RP11-1360A14, WORKING DRAFT SEQUENCE, 18 unordered pieces.    44  1.8  1
AC138809|AC138809.1 Homo sapiens chromosome 5 clone RP11-1026N13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.8  1
AC139284|AC139284.2 Homo sapiens chromosome 5 clone RP11-842E11, WORKING DRAFT SEQUENCE, 1 unordered piece.    44  1.8  1
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6DGV1) RecName: Full=CUG-BP- and ETR-3-like factor 4;         ...   132   8e-30
AC005275_3(AC005275|pid:none) Arabidopsis thaliana BAC F4C21 fro...   130   2e-29
AY065261_1(AY065261|pid:none) Arabidopsis thaliana putative ribo...   130   2e-29
(Q7ZWM3) RecName: Full=CUG-BP- and ETR-3-like factor 3-B;       ...   130   2e-29
AK316961_1(AK316961|pid:none) Arabidopsis thaliana AT4G03110 mRN...   130   2e-29
CR760829_1(CR760829|pid:none) Xenopus tropicalis finished cDNA, ...   129   4e-29
(Q91579) RecName: Full=CUG-BP- and ETR-3-like factor 3-A;       ...   129   4e-29
U16800_1(U16800|pid:none) Xenopus laevis elav-type ribonucleopro...   129   4e-29
BC154063_1(BC154063|pid:none) Xenopus tropicalis trinucleotide r...   129   4e-29
EF520347_1(EF520347|pid:none) Gallus gallus CUG-BP and ETR-3-lik...   129   4e-29
protein update 2009. 3.22
PSORT 

 psg: 0.72  gvh: 0.48  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSG226 is nuc
5' end seq. ID VSG226F
5' end seq. 
>VSG226F.Seq
GTTCTAGATCGCG----------
Length of 5' end seq. 13
3' end seq. ID VSG226Z
3' end seq. 
>VSG226Z.Seq
----------ATTGGAAGATTTGAACCTGGAAGAGTATGTTTACCATCGATTTCTCTTAA
GGCATTTTCAGATTCATCTCTGGTTGAGTATTTAATGAAACCATAACCCTTTGGTTTACC
ATCCTTTTCTCTAACAATGTTCAAATCTTCAATAATACCATAGTTTCCAAACAAAATACG
AATTTGATCTTCATCGGAGGTACCTAACATACCAATGAATAATTTTCTTTCCATCTTTTC
AATTTCATTATCTGAATATTTAACTTGTAATGGTTTATTCATATTTTCGAGGAAAGTTCC
ACTTTCGTTTGTGGTATTTAATGCATTATCAGCTTCTTCTTTAGTTGAGAATGTAATAAA
AGCGCAACCTTTTGANACATTTGTTCTTTTATCTTTAANCATAGTAATATCGAGGATANT
ACCAAATTTATTAAAGATTTGAGAGACNCCTTCTTCATTCATTGAAGATGGAATATGGCC
AACGAAAACAGTGAAACCACCGAGTTGANTTGAGATTGTTGTTGTTGNTGTTGTTGGAGC
GATTGCAT
Length of 3' end seq. 538
Connected seq. ID VSG226P
Connected seq. 
>VSG226P.Seq
GTTCTAGATCGCG----------ATTGGAAGATTTGAACCTGGAAGAGTATGTTTACCAT
CGATTTCTCTTAAGGCATTTTCAGATTCATCTCTGGTTGAGTATTTAATGAAACCATAAC
CCTTTGGTTTACCATCCTTTTCTCTAACAATGTTCAAATCTTCAATAATACCATAGTTTC
CAAACAAAATACGAATTTGATCTTCATCGGAGGTACCTAACATACCAATGAATAATTTTC
TTTCCATCTTTTCAATTTCATTATCTGAATATTTAACTTGTAATGGTTTATTCATATTTT
CGAGGAAAGTTCCACTTTCGTTTGTGGTATTTAATGCATTATCAGCTTCTTCTTTAGTTG
AGAATGTAATAAAAGCGCAACCTTTTGANACATTTGTTCTTTTATCTTTAANCATAGTAA
TATCGAGGATANTACCAAATTTATTAAAGATTTGAGAGACNCCTTCTTCATTCATTGAAG
ATGGAATATGGCCAACGAAAACAGTGAAACCACCGAGTTGANTTGAGATTGTTGTTGTTG
NTGTTGTTGGAGCGATTGCAT
Length of connected seq. 551
Full length Seq ID -
Full length Seq. -
Length of full length seq. -