VSG215
Library VS
(Link to library)
Clone ID VSG215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13538-1
Original site URL
Representative seq. ID VSG215P
(Link to Original site)
Representative DNA sequence
>VSG215 (VSG215Q) /CSM/VS/VSG2-A/VSG215Q.Seq.d/
CGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGT
GGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTAT
GACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTATTTAAATGTTTTGCAACAAAG
ATTAACAAAATATAATAAAAACTAAAAAAAAAAXXXXXXXXXXCGTTATTGTTTAAAACA
ATTACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGTGGTCGTACCATCACTGC
TACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTATGACAAAAAAAACAAAAT
CTAAATAATCACGATTTAAGTATTTAAATGTTTTGCAACAAAGAATTAACAAAATA
sequence update 2001. 3.22
Translated Amino Acid sequence
llfktitklksh*nrrcqrwsyhhcyrp*rsrqnrqanl*qkkqnlnnhdlsi*mfcnkd
*QNIIKTKKK---

---RYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQIYDKKNKI*iiti*vfkcf
atkn*qn


Translated Amino Acid sequence (All Frames)
Frame A:
ryclkqlqnlkvietdavkggrtitatgrrdldriakqiydkknki*iiti*vfkcfatk
inki**klkkk---

---RYCLKQLQNLKVIETDAVKGGRTITATGRRDLDRIAKQIYDKKNKI*iiti*vfkcf
atkn*qn

Frame B:
viv*nnykt*kslkptlskvvvpsllpaveistespsksmtkktksk*srfkylnvlqqr
ltkynkn*kk---

---viv*nnykt*kslkptlskvvvpsllpaveistespsksmtkktksk*srfkylnvl
qqrinki

Frame C:
llfktitklksh*nrrcqrwsyhhcyrp*rsrqnrqanl*qkkqnlnnhdlsi*mfcnkd
*QNIIKTKKK---

---llfktitklksh*nrrcqrwsyhhcyrp*rsrqnrqanl*qkkqnlnnhdlsi*mfc
nkeltk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI124 (VSI124Q) /CSM/VS/VSI1-A/VSI124Q.Seq.d/ 355 3e-97
VSH112 (VSH112Q) /CSM/VS/VSH1-A/VSH112Q.Seq.d/ 355 3e-97
VSG523 (VSG523Q) /CSM/VS/VSG5-A/VSG523Q.Seq.d/ 355 3e-97
VSG304 (VSG304Q) /CSM/VS/VSG3-A/VSG304Q.Seq.d/ 355 3e-97
VSG215 (VSG215Q) /CSM/VS/VSG2-A/VSG215Q.Seq.d/ 355 3e-97
VSF788 (VSF788Q) /CSM/VS/VSF7-D/VSF788Q.Seq.d/ 355 3e-97
VSF257 (VSF257Q) /CSM/VS/VSF2-C/VSF257Q.Seq.d/ 355 3e-97
VSE706 (VSE706Q) /CSM/VS/VSE7-A/VSE706Q.Seq.d/ 355 3e-97
VSE584 (VSE584Q) /CSM/VS/VSE5-D/VSE584Q.Seq.d/ 355 3e-97
VSD647 (VSD647Q) /CSM/VS/VSD6-B/VSD647Q.Seq.d/ 355 3e-97

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC103861|AC103861.1 Homo sapiens chromosome 11 clone RP11-160M15 map 11, LOW-PASS SEQUENCE SAMPLING. 38 0.002 5
BE898237|BE898237.1 601681004F1 NIH_MGC_9 Homo sapiens cDNA clone IMAGE:3951384 5', mRNA sequence. 34 0.17 2
AX252128|AX252128.1 Sequence 389 from Patent WO0168911. 30 0.23 6
AZ674283|AZ674283.1 ENTKZ19TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.25 2
BH136259|BH136259.1 ENTOI23TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 0.26 2
AF303741|AF303741.1 Chilo iridescent virus complete genome. 40 0.38 9
AX458633|AX458633.1 Sequence 179 from Patent WO0246454. 36 0.40 5
AL935049|AL935049.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-185K2. 42 0.47 7
AX345178|AX345178.1 Sequence 249 from Patent WO0200928. 32 0.70 3
AF287134|AF287134.1 Ochromonas danica mitochondrial DNA, complete genome. 36 0.87 4
dna update 2003. 8.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X51) RecName: Full=40S ribosomal protein S19; 74 1e-12
AC149197_14(AC149197|pid:none) Medicago truncatula clone mth2-33... 45 7e-04
CP000591_243(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.001
AY857477_1(AY857477|pid:none) Suberites domuncula S19 mRNA, comp... 44 0.002
AM482118_1(AM482118|pid:none) Vitis vinifera contig VV78X156932.... 44 0.002
EU284825_1(EU284825|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 44 0.002
(P27073) RecName: Full=40S ribosomal protein S19; AltName: Full=... 42 0.006
(Q9FNP8) RecName: Full=40S ribosomal protein S19-3; &AB006696_1... 42 0.008
(Q9SGA6) RecName: Full=40S ribosomal protein S19-1; &AC011664_1... 42 0.008
AJ563464_1(AJ563464|pid:none) Crassostrea gigas partial mRNA for... 42 0.008
protein update 2009. 3.22
PSORT

psg: 0.60 gvh: 0.25 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.03
nuc: 0.23 erl: 0.00 erm: 0.60 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for VSG215 is nuc

5' end seq. ID VSG215F
5' end seq.
>VSG215F.Seq
CGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGT
GGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTAT
GACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTATTTAAATGTTTTGCAACAAAG
ATTAACAAAATATAATAAAAACTAAAAAAAAAA----------
Length of 5' end seq. 213
3' end seq. ID VSG215Z
3' end seq.
>VSG215Z.Seq
----------CGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTGAAACCGACGC
TGTCAAAGGTGGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACAGAATCGCCAA
GCAAATCTATGACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTATTTAAATGTTT
TGCAACAAAGAATTAACAAAATA
Length of 3' end seq. 193
Connected seq. ID VSG215P
Connected seq.
>VSG215P.Seq
CGTTATTGTTTAAAACAATTACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGT
GGTCGTACCATCACTGCTACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTAT
GACAAAAAAAACAAAATCTAAATAATCACGATTTAAGTATTTAAATGTTTTGCAACAAAG
ATTAACAAAATATAATAAAAACTAAAAAAAAAA----------CGTTATTGTTTAAAACA
ATTACAAAACTTAAAAGTCATTGAAACCGACGCTGTCAAAGGTGGTCGTACCATCACTGC
TACCGGCCGTAGAGATCTCGACAGAATCGCCAAGCAAATCTATGACAAAAAAAACAAAAT
CTAAATAATCACGATTTAAGTATTTAAATGTTTTGCAACAAAGAATTAACAAAATA
Length of connected seq. 406
Full length Seq ID -
Full length Seq. -
Length of full length seq. -