VSG210
Library VS
(Link to library)
Clone ID VSG210
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14854-1
Original site URL
Representative seq. ID VSG210P
(Link to Original site)
Representative DNA sequence
>VSG210 (VSG210Q) /CSM/VS/VSG2-A/VSG210Q.Seq.d/
AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCT
TACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTG
GTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGG
TTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAG
TTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAG
ATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTG
ATATGTTTATAAATAAAAAAAATTTTAAAAAAAAAAXXXXXXXXXXAATTTTAGTTGGTT
CCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCTTACACGACGCCAAA
TTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTGGTGTCAAAGTTGAA
AAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGGTTGATTCAATCTTA
TCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAGTTGCTGCCGCCGCC
GCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAGATGACGATATGGGT
ATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTAATATGTTTATAAAT
AAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
f*lvphninmsaldyatlilhdaklaitadnlvalcnaagvkvekfkadlyastlekkkv
dsilsvsaaaaapaaaaapvaaaaaapakkvveekkeesdddmgmglfd*kcl*FKQTFD
MFINKKNFKKK---

---NFSWFHIT*tcpp*ttpl*syttpn*qsllitslpyamplvsklknskliymlap*k
rrrliqsypsvllllpqlplllqllpppplqprksskkrkknqmtiwvwvssiksafnls
kllicl*ikk


Translated Amino Acid sequence (All Frames)
Frame A:
nfswfhit*tcpp*ttpl*syttpn*qsllitslpyamplvsklknskliymlap*krrr
liqsypsvllllpqlplllqllpppplqprksskkrkknqmtiwvwvssiksafnlskll
icl*ikkilkkk---

---NFSWFHIT*tcpp*ttpl*syttpn*qsllitslpyamplvsklknskliymlap*k
rrrliqsypsvllllpqlplllqllpppplqprksskkrkknqmtiwvwvssiksafnls
kllicl*ikk

Frame B:
ilvgst*hkhvrlrlrhfnltrrqisnhc**prclmqcrwcqs*kiqs*fic*hlrkeeg
*fnlirqcccccpscrccssccrrrrssqesrrrkerrir*rygygslrlkvpli*anf*
yvyk*kkf*kk---

---ilvgst*hkhvrlrlrhfnltrrqisnhc**prclmqcrwcqs*kiqs*fic*hlrk
eeg*fnlirqcccccpscrccssccrrrrssqesrrrkerrir*rygygslrlkvpli*a
nf*yvyk*k

Frame C:
f*lvphninmsaldyatlilhdaklaitadnlvalcnaagvkvekfkadlyastlekkkv
dsilsvsaaaaapaaaaapvaaaaaapakkvveekkeesdddmgmglfd*kcl*FKQTFD
MFINKKNFKKK---

---f*lvphninmsaldyatlilhdaklaitadnlvalcnaagvkvekfkadlyastlek
kkvdsilsvsaaaaapaaaaapvaaaaaapakkvveekkeesdddmgmglfd*kcl*fkq
tfnmfinkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG210 (VSG210Q) /CSM/VS/VSG2-A/VSG210Q.Seq.d/ 400 e-110
VSA784 (VSA784Q) /CSM/VS/VSA7-D/VSA784Q.Seq.d/ 400 e-110
VHM306 (VHM306Q) /CSM/VH/VHM3-A/VHM306Q.Seq.d/ 400 e-110
VSH627 (VSH627Q) /CSM/VS/VSH6-B/VSH627Q.Seq.d/ 387 e-106
VSA684 (VSA684Q) /CSM/VS/VSA6-D/VSA684Q.Seq.d/ 343 2e-93
VSF438 (VSF438Q) /CSM/VS/VSF4-B/VSF438Q.Seq.d/ 178 8e-44
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/ 105 1e-21
VFF227 (VFF227Q) /CSM/VF/VFF2-B/VFF227Q.Seq.d/ 105 1e-21
SLI750 (SLI750Q) /CSM/SL/SLI7-C/SLI750Q.Seq.d/ 103 4e-21
SLI743 (SLI743Q) /CSM/SL/SLI7-B/SLI743Q.Seq.d/ 103 4e-21

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0. 103 1e-21 3
X56192|X56192.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P2. 80 5e-11 1
CD203589|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence. 58 6e-06 2
BM439242|BM439242.1 GIT0000050 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 62 1e-05 1
CF200446|CF200446.1 GIT1448 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 62 1e-05 1
BE188396|BE188396.1 PvB 194 L99-22 Penaeus (Litopenaeus) vannamei cDNA similar to 60S Acidic Ribosomal Protein P2, mRNA sequence. 46 4e-05 2
BM027560|BM027560.1 GIT0001059 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence. 58 2e-04 1
X56193|X56193.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P1. 58 2e-04 1
AW288169|AW288169.1 SWOv3MCAM34F10SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM34F10 5', mRNA sequence. 52 7e-04 2
AC133288|AC133288.1 Homo sapiens chromosome 8 clone RP11-452A16 map 8, LOW-PASS SEQUENCE SAMPLING. 42 0.001 2
dna update 2003. 8.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382126_241(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 54 5e-06
AL033497_3(AL033497|pid:none) C.albicans cosmid Ca49C10. &T5214... 54 7e-06
(P29763) RecName: Full=60S acidic ribosomal protein P1; &R6KM1C... 54 7e-06
(P10622) RecName: Full=60S acidic ribosomal protein P1-beta; ... 54 7e-06
AE016817_656(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 53 9e-06
AY558526_1(AY558526|pid:none) Saccharomyces cerevisiae clone FLH... 53 1e-05
CP000496_606(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 52 2e-05
CR382128_495(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 51 3e-05
CP000500_166(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 51 5e-05
(P05318) RecName: Full=60S acidic ribosomal protein P1-alpha; ... 50 8e-05
protein update 2009. 3.22
PSORT

psg: 0.37 gvh: -0.12 alm: 0.74 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VSG210 is nuc

5' end seq. ID VSG210F
5' end seq.
>VSG210F.Seq
AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCT
TACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTG
GTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGG
TTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAG
TTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAG
ATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTG
ATATGTTTATAAATAAAAAAAATTTTAAAAAAAAAA----------
Length of 5' end seq. 396
3' end seq. ID VSG210Z
3' end seq.
>VSG210Z.Seq
----------AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCC
ACTTTAATCTTACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGC
AATGCCGCTGGTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAA
AAGAAGAAGGTTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCT
GCTGCTCCAGTTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAA
GAAGAATCAGATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAG
CAAACTTTTAATATGTTTATAAATAAAAAAA
Length of 3' end seq. 381
Connected seq. ID VSG210P
Connected seq.
>VSG210P.Seq
AATTTTAGTTGGTTCCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCT
TACACGACGCCAAATTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTG
GTGTCAAAGTTGAAAAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGG
TTGATTCAATCTTATCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAG
TTGCTGCCGCCGCCGCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAG
ATGACGATATGGGTATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTG
ATATGTTTATAAATAAAAAAAATTTTAAAAAAAAAA----------AATTTTAGTTGGTT
CCACATAACATAAACATGTCCGCCTTAGACTACGCCACTTTAATCTTACACGACGCCAAA
TTAGCAATCACTGCTGATAACCTCGTTGCCTTATGCAATGCCGCTGGTGTCAAAGTTGAA
AAATTCAAAGCTGATTTATATGCTAGCACCTTAGAAAAGAAGAAGGTTGATTCAATCTTA
TCCGTCAGTGCTGCTGCTGCTGCCCCAGCTGCCGCTGCTGCTCCAGTTGCTGCCGCCGCC
GCCGCTCCAGCCAAGAAAGTCGTCGAAGAAAAGAAAGAAGAATCAGATGACGATATGGGT
ATGGGTCTCTTCGATTAAAAGTGCCTTTAATTTAAGCAAACTTTTAATATGTTTATAAAT
AAAAAAA
Length of connected seq. 777
Full length Seq ID -
Full length Seq. -
Length of full length seq. -