NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG209
Library VS
(Link to library)
Clone ID VSG209
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12508-1|Contig-U15943-1
Original site URL
Representative seq. ID VSG209P
(Link to Original site)
Representative DNA sequence 
>VSG209 (VSG209Q) /CSM/VS/VSG2-A/VSG209Q.Seq.d/
GTCGATTCAAATCTATCAATCTCTCAAATATTGAAACAAATTTGTACAAAATATAAAATT
GAAGGTTCTGAAAGATTCTCTATTATAACCACTGAAGAATTTCCATTGATTCTTAATGAA
AATTCAACATTGGGTCATTATGGTTTAGGTAATAAATTTCAAACTTTAGAATTATCAATC
GTTTTCACTGAACTCATTCCACCCTATTCCCTAAAGAATAATAATGTCCCAACATTTGGT
GCTTTTCAAGTTGGTAGTGTTGATCCAGTACAATCGAAAGCGGTTATCATCGATTTAGAG
AATAAACTTCAAGATCATTTGAAATTGGGTGAAGAAATGGTTTTACAAATTAAAAATTTA
GCTTCAGATTTAAAAGATAAAGAAAGAGAAATTAAAGATNAAGAAGCACAXXXXXXXXXX
TATTTCATGATAATAAAAATGAATTGGAAAGCATTGTTAAATGAAGAGAAAATAAGAAAT
CCANAAAGAAAGTTTAGAATCATTTTTAAAAAGACAAGNNAAAAGATTAGCAAAAGAGAA
NAAAGAACAAAAAGAAAAAGAAGATGGTATAATTGATTCAACTACTACCATAAAAGAATC
AGAACCAGAAGTTGATGAAGATTTAAGAAAATTATTTGTTGGTGGTATTAATTGTGATGA
TATTACTGATAGTAAAATTGTTAAAGATTTAAAGAAATTGGAAAAAATTCGTGATAAAAG
AATTCAATCATTATTAAAACTTTNTGATAAATTTGGTAAAGTTCAAAAACGTACTATTAA
TTCATCAAAAGGTTTATTCTTTATCACTTATGTCGATATTGAAAGTTGTACAAAAGCAAT
TCNATTTTATTCACATTAAAGAAAATAGAAAAGCAGCAATTGACGAAATCTCAAAATTAC
CAAGAAAAATCACCACTTTATAATCCAAATAAANAATTCTATGTTAAAATTGTAAAATCA
AATGAAAAAGCNCCAAAGNAAACAAATTTTTGATAAACAAAAAATTGAAAATCTTAAAGC
CACTGCTAAAAANAATTACAAAAAGAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
VDSNLSISQILKQICTKYKIEGSERFSIITTEEFPLILNENSTLGHYGLGNKFQTLELSI
VFTELIPPYSLKNNNVPTFGAFQVGSVDPVQSKAVIIDLENKLQDHLKLGEEMVLQIKNL
ASDLKDKEREIKDXEA---

---YFMIIKMNWKALLNEEKIRNPXRKFRIIFKKTXXKISKREXRTKRKRRWYN*fnyyh
krirtrs**rfkkiicwwy*l**yy***nc*rfkeigkns**knsiiiktx**iw*sskt
yy*fikrfilyhlcry*klyksnsilftlkkiekqqltksqnyqeksplynpnkxfyvki
vksnekapkxtnf**tkn*ks*shc*kxlqke
Translated Amino Acid sequence (All Frames) 
Frame A:
VDSNLSISQILKQICTKYKIEGSERFSIITTEEFPLILNENSTLGHYGLGNKFQTLELSI
VFTELIPPYSLKNNNVPTFGAFQVGSVDPVQSKAVIIDLENKLQDHLKLGEEMVLQIKNL
ASDLKDKEREIKDXEA---

---YFMIIKMNWKALLNEEKIRNPXRKFRIIFKKTXXKISKREXRTKRKRRWYN*fnyyh
krirtrs**rfkkiicwwy*l**yy***nc*rfkeigkns**knsiiiktx**iw*sskt
yy*fikrfilyhlcry*klyksnsilftlkkiekqqltksqnyqeksplynpnkxfyvki
vksnekapkxtnf**tkn*ks*shc*kxlqke

Frame B:
siqiyqslky*nkfvqniklkvlkdsll*plknfh*flmkiqhwvimv*vinfkl*nyqs
fslnsfhpip*riimsqhlvlfklvvliqynrkrlssi*rinfkii*nwvkkwfyklki*
lqi*kikkeklkxkkh---

---is***k*igkhc*mkrk*eixkeslesflkrqxkrlakexkeqkekedgiidsttti
kesepevdedlrklfvggincdditdskivkdlkklekirdkriqsllklxdkfgkvqkr
tinsskglffityvdiesctkaixfysh*rk*kssn*rnlkitkknhhfiiqixnsmlkl
*nqmkkxqxkqifdkqkienlkatakxnykk

Frame C:
rfksinlsnietnlyki*n*rf*kilyynh*risids**kfnigslwfr**isnfriinr
fh*thstlfpke**cpniwcfssw*c*sstiesgyhrfre*tsrsfeig*rngftn*kfs
frfkr*rkrn*rxrst---

---fhdnknelesivk*renkksxkkv*nhf*kdkxkd*qkrxknkkkkkmv*liqllp*
knqnqklmki*enyllvvlivmillivkllki*rnwkkfvikefnhy*nfxinlvkfknv
llihqkvyslslmsilkvvqkqfxfihikenrkaaideisklprkittl*sk*xilc*nc
kik*ksxkxnkflinkklkilkpllkxitkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG209 (VSG209Q) /CSM/VS/VSG2-A/VSG209Q.Seq.d/                        955   0.0
VSD589 (VSD589Q) /CSM/VS/VSD5-D/VSD589Q.Seq.d/                        569   e-161
VHJ561 (VHJ561Q) /CSM/VH/VHJ5-C/VHJ561Q.Seq.d/                        509   e-143
FC-AA18 (FC-AA18Q) /CSM/FC/FC-AA/FC-AA18Q.Seq.d/                      119   9e-26
VHM693 (VHM693Q) /CSM/VH/VHM6-D/VHM693Q.Seq.d/                         40   0.067
VHH739 (VHH739Q) /CSM/VH/VHH7-B/VHH739Q.Seq.d/                         40   0.067
VHE410 (VHE410Q) /CSM/VH/VHE4-A/VHE410Q.Seq.d/                         40   0.067
SLF661 (SLF661Q) /CSM/SL/SLF6-C/SLF661Q.Seq.d/                         40   0.067
CHF241 (CHF241Q) /CSM/CH/CHF2-B/CHF241Q.Seq.d/                         40   0.067
CHD484 (CHD484Q) /CSM/CH/CHD4-D/CHD484Q.Seq.d/                         40   0.067
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.   799  0.0  5
AJ293265|AJ293265.1 Cryptosporidium parvum microsatellite. clone 1.    44  0.065  2
AC121335|AC121335.5 Homo sapiens 12 BAC RP13-515F16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36  0.076  6
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    36  0.077  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34  0.094  12
AC108811|AC108811.7 Mus musculus clone RP23-284C19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  0.13  6
AX344558|AX344558.1 Sequence 9 from Patent WO0200932.             40  0.14  9
AZ675784|AZ675784.1 ENTMI89TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.23  3
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    34  0.25  11
AE015937|AE015937.1 Clostridium tetani E88, section 2 of 10 of the complete genome.    34  0.27  11
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_4(AC114263|pid:none) Dictyostelium discoideum chromosom...   263   7e-69
AF309947_2(AF309947|pid:none) Dictyostelium discoideum Rac1A (ra...    53   2e-05
DQ890022_471(DQ890022|pid:none) Paramecium bursaria Chlorella vi...    35   4.1
AY815474_1(AY815474|pid:none) Schistosoma japonicum SJCHGC06052 ...    35   4.1
DQ119137_1(DQ119137|pid:none) Aplysia californica nonmuscle myos...    35   4.1
S03166(S03166;A27066;A26045;A36604;A43298) myosin heavy chain, g...    35   5.3
EF085052_1(EF085052|pid:none) Picea sitchensis clone WS0286_P07 ...    34   6.9
AB020673_1(AB020673|pid:none) Homo sapiens mRNA for KIAA0866 pro...    34   7.0
D10667_1(D10667|pid:none) Homo sapiens mRNA for smooth muscle my...    34   7.0
X69292_1(X69292|pid:none) H.sapiens mRNA for smooth muscle myosin.     34   7.0
protein update 2009. 3.22
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.27  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VSG209 is nuc
5' end seq. ID VSG209F
5' end seq. 
>VSG209F.Seq
GTCGATTCAAATCTATCAATCTCTCAAATATTGAAACAAATTTGTACAAAATATAAAATT
GAAGGTTCTGAAAGATTCTCTATTATAACCACTGAAGAATTTCCATTGATTCTTAATGAA
AATTCAACATTGGGTCATTATGGTTTAGGTAATAAATTTCAAACTTTAGAATTATCAATC
GTTTTCACTGAACTCATTCCACCCTATTCCCTAAAGAATAATAATGTCCCAACATTTGGT
GCTTTTCAAGTTGGTAGTGTTGATCCAGTACAATCGAAAGCGGTTATCATCGATTTAGAG
AATAAACTTCAAGATCATTTGAAATTGGGTGAAGAAATGGTTTTACAAATTAAAAATTTA
GCTTCAGATTTAAAAGATAAAGAAAGAGAAATTAAAGATNAAGAAGCACA----------
Length of 5' end seq. 410
3' end seq. ID VSG209Z
3' end seq. 
>VSG209Z.Seq
----------TATTTCATGATAATAAAAATGAATTGGAAAGCATTGTTAAATGAAGAGAA
AATAAGAAATCCANAAAGAAAGTTTAGAATCATTTTTAAAAAGACAAGNNAAAAGATTAG
CAAAAGAGAANAAAGAACAAAAAGAAAAAGAAGATGGTATAATTGATTCAACTACTACCA
TAAAAGAATCAGAACCAGAAGTTGATGAAGATTTAAGAAAATTATTTGTTGGTGGTATTA
ATTGTGATGATATTACTGATAGTAAAATTGTTAAAGATTTAAAGAAATTGGAAAAAATTC
GTGATAAAAGAATTCAATCATTATTAAAACTTTNTGATAAATTTGGTAAAGTTCAAAAAC
GTACTATTAATTCATCAAAAGGTTTATTCTTTATCACTTATGTCGATATTGAAAGTTGTA
CAAAAGCAATTCNATTTTATTCACATTAAAGAAAATAGAAAAGCAGCAATTGACGAAATC
TCAAAATTACCAAGAAAAATCACCACTTTATAATCCAAATAAANAATTCTATGTTAAAAT
TGTAAAATCAAATGAAAAAGCNCCAAAGNAAACAAATTTTTGATAAACAAAAAATTGAAA
ATCTTAAAGCCACTGCTAAAAANAATTACAAAAAGAA
Length of 3' end seq. 627
Connected seq. ID VSG209P
Connected seq. 
>VSG209P.Seq
GTCGATTCAAATCTATCAATCTCTCAAATATTGAAACAAATTTGTACAAAATATAAAATT
GAAGGTTCTGAAAGATTCTCTATTATAACCACTGAAGAATTTCCATTGATTCTTAATGAA
AATTCAACATTGGGTCATTATGGTTTAGGTAATAAATTTCAAACTTTAGAATTATCAATC
GTTTTCACTGAACTCATTCCACCCTATTCCCTAAAGAATAATAATGTCCCAACATTTGGT
GCTTTTCAAGTTGGTAGTGTTGATCCAGTACAATCGAAAGCGGTTATCATCGATTTAGAG
AATAAACTTCAAGATCATTTGAAATTGGGTGAAGAAATGGTTTTACAAATTAAAAATTTA
GCTTCAGATTTAAAAGATAAAGAAAGAGAAATTAAAGATNAAGAAGCACA----------
TATTTCATGATAATAAAAATGAATTGGAAAGCATTGTTAAATGAAGAGAAAATAAGAAAT
CCANAAAGAAAGTTTAGAATCATTTTTAAAAAGACAAGNNAAAAGATTAGCAAAAGAGAA
NAAAGAACAAAAAGAAAAAGAAGATGGTATAATTGATTCAACTACTACCATAAAAGAATC
AGAACCAGAAGTTGATGAAGATTTAAGAAAATTATTTGTTGGTGGTATTAATTGTGATGA
TATTACTGATAGTAAAATTGTTAAAGATTTAAAGAAATTGGAAAAAATTCGTGATAAAAG
AATTCAATCATTATTAAAACTTTNTGATAAATTTGGTAAAGTTCAAAAACGTACTATTAA
TTCATCAAAAGGTTTATTCTTTATCACTTATGTCGATATTGAAAGTTGTACAAAAGCAAT
TCNATTTTATTCACATTAAAGAAAATAGAAAAGCAGCAATTGACGAAATCTCAAAATTAC
CAAGAAAAATCACCACTTTATAATCCAAATAAANAATTCTATGTTAAAATTGTAAAATCA
AATGAAAAAGCNCCAAAGNAAACAAATTTTTGATAAACAAAAAATTGAAAATCTTAAAGC
CACTGCTAAAAANAATTACAAAAAGAA
Length of connected seq. 1037
Full length Seq ID -
Full length Seq. -
Length of full length seq. -