AFB825
Library AF
(Link to library)
Clone ID AFB825
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16593-1
Original site URL
Representative seq. ID AFB825Z
(Link to Original site)
Representative DNA sequence
>AFB825 (AFB825Q) /CSM/AF/AFB8-B/AFB825Q.Seq.d/
XXXXXXXXXXACTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTC
CCTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGG
TGGTTTTGCATCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTC
CAACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGG
TGTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGC
TATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTA
CTACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCA
CGAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAA
CTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---GSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESN
YPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYY
MSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKN


Translated Amino Acid sequence (All Frames)
Frame A:
---lvh*kvptvsptvn*spslnnn*livlslpvvkvvvvvlhhlhsntswklvvsppsp
tiht*ckmvsaeielslhqvfqslvtsmlplvvnlpfktlspplvqspspsmpllmisvt
tclvftiiqpvkmv*miwitkf*llvmvlikvkiis*lkt


Frame B:
---wfirryqlchqr*islpl*ttis*lcypyr*srlwwwfciicipirhgnw*srhrvq
lsilnakwslqr*nchsircfnhwlrqcylw**icpskryrhhwssrhrhrclc**fpll
hvwclq*ssl*kwfr*fgsrsfsywlwylsrsrlfls*kl


Frame C:
---GSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATESN
YPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYY
MSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKN


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO640 (VFO640Q) /CSM/VF/VFO6-B/VFO640Q.Seq.d/ 938 0.0
VFO148 (VFO148Q) /CSM/VF/VFO1-B/VFO148Q.Seq.d/ 938 0.0
VFM638 (VFM638Q) /CSM/VF/VFM6-B/VFM638Q.Seq.d/ 938 0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/ 938 0.0
VFH711 (VFH711Q) /CSM/VF/VFH7-A/VFH711Q.Seq.d/ 938 0.0
VFG444 (VFG444Q) /CSM/VF/VFG4-B/VFG444Q.Seq.d/ 938 0.0
VFB191 (VFB191Q) /CSM/VF/VFB1-D/VFB191Q.Seq.d/ 938 0.0
VFB166 (VFB166Q) /CSM/VF/VFB1-C/VFB166Q.Seq.d/ 938 0.0
SFL481 (SFL481Q) /CSM/SF/SFL4-D/SFL481Q.Seq.d/ 938 0.0
SFJ805 (SFJ805Q) /CSM/SF/SFJ8-A/SFJ805Q.Seq.d/ 938 0.0

own update 2001.11.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X87214|X87214.1 E.histolytica mRNA for cysteine proteinase. 54 0.002 1
X87213|X87213.1 E.dispar mRNA for cysteine proteinase. 54 0.002 1
S58669|S58669.1 Entamoeba histolytica cysteine proteinase precursor (ACP1) gene, partial cds. 54 0.002 1
AZ547119|AZ547119.1 ENTFS26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 0.002 1
AZ674505|AZ674505.1 ENTIZ88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 0.002 1
M27307|M27307.1 Entamoeba histolytica cysteine protease gene, partial cds. 54 0.002 1
BM162482|BM162482.1 EST565005 PyBS Plasmodium yoelii yoelii cDNA clone PYCKT14 5' end, mRNA sequence. 48 0.099 1
BM166059|BM166059.1 EST568582 PyBS Plasmodium yoelii yoelii cDNA clone PYCNC01 5' end, mRNA sequence. 48 0.099 1
BF296929|BF296929.1 044PbF11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 48 0.099 1
AY063763|AY063763.1 Plasmodium berghei berghepain-2 mRNA, complete cds. 48 0.099 1
dna update 2003. 7.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 163 2e-39
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 153 2e-36
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,... 152 3e-36
FJ349098_1(FJ349098|pid:none) Acanthodendrilla sp. Vietnam cathe... 152 5e-36
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst... 151 8e-36
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik... 150 1e-35
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li... 149 3e-35
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr... 149 3e-35
AF542132_1(AF542132|pid:none) Theromyzon tessulatum cathepsin L ... 149 4e-35
EF670319_1(EF670319|pid:none) Artemia persimilis cathepsin L-1 (... 147 9e-35
protein update 2009. 3.27
PSORT

psg: 0.75 gvh: 0.59 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFB825 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFB825Z
3' end seq.
>AFB825Z.Seq
----------ACTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTC
CCTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGG
TGGTTTTGCATCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTC
CAACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGG
TGTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGC
TATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTA
CTACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCA
CGAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAA
CTC
Length of 3' end seq. 473
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -