NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG169
Library VS
(Link to library)
Clone ID VSG169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG169P
(Link to Original site)
Representative DNA sequence 
>VSG169 (VSG169Q) /CSM/VS/VSG1-C/VSG169Q.Seq.d/
TACTCAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTACTCAATACCCAAACATCA
GTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGGTAAAA
AAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTT
CATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCA
GAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAACA
TCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTTGAAAAAAAAAAXXXXXXXXXXAA
NATTTNCTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGNTACTCAATACCCAAA
CATCAGTTTAATCAAAAATGAAGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGG
TAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAA
AATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTT
CGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCNCAGTCAGAGTTATGTTATACCCATC
AAACATCTAAATAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
tqrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisqkpnwsqnf
mg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKRKKKLFEKK---

---XIXSKGVVLGYRRSQXTQYPNISLIKNEGVVSREDSTFYLGKKVCLVSKVSKSAKNP
TGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAXVRVMLYPSNI*i
Translated Amino Acid sequence (All Frames) 
Frame A:
yskvsf*vtedhkllntqtsv*sklkvlshvkiqlfi*vkksv*sakfpnqpktqlvtkf
hgvrfakptvvqvlsklvspetshqklwvpqselcythqtsk*ifktkkkii*kkk---

---XIXSKGVVLGYRRSQXTQYPNISLIKNEGVVSREDSTFYLGKKVCLVSKVSKSAKNP
TGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAXVRVMLYPSNI*i

Frame B:
tqrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisqkpnwsqnf
mg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKRKKKLFEKK---

---xfxqkvsf*vtedhkxlntqtsv*skmkvlshvkiqlfi*vkksv*sakfpnqpktq
lvtkfhgvrfakptvvqvlsklvspetshqklwvpqselcythqtsk*

Frame C:
lkgvvlgyrrsqatqypnislikiegvvsredstfylgkkvclvskvsksaknptghkis
wgkickthgssgvvqarfarnlppkamgapvrvmlypsni*inl*nekknylkkk---

---xxlkrcrfrlqkitxysipkhqfnqk*rcclt*rfnflfr*kslfsqqsfqisqkpn
wsqnfmg*dlqnpr*frccpssfrqkpptksygcxsqsyvipikhlnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI656 (VSI656Q) /CSM/VS/VSI6-C/VSI656Q.Seq.d/                        624   e-178
VSG169 (VSG169Q) /CSM/VS/VSG1-C/VSG169Q.Seq.d/                        624   e-178
VSD221 (VSD221Q) /CSM/VS/VSD2-A/VSD221Q.Seq.d/                        624   e-178
VSK108 (VSK108Q) /CSM/VS/VSK1-A/VSK108Q.Seq.d/                        615   e-175
VSJ792 (VSJ792Q) /CSM/VS/VSJ7-D/VSJ792Q.Seq.d/                        615   e-175
VSJ573 (VSJ573Q) /CSM/VS/VSJ5-D/VSJ573Q.Seq.d/                        615   e-175
VSJ462 (VSJ462Q) /CSM/VS/VSJ4-C/VSJ462Q.Seq.d/                        615   e-175
VSJ438 (VSJ438Q) /CSM/VS/VSJ4-B/VSJ438Q.Seq.d/                        615   e-175
VSJ322 (VSJ322Q) /CSM/VS/VSJ3-A/VSJ322Q.Seq.d/                        615   e-175
VSJ132 (VSJ132Q) /CSM/VS/VSJ1-B/VSJ132Q.Seq.d/                        615   e-175
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ834795|BQ834795.1 Po_ad_03E06_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_03E06 5' similar to BAB27124 ES CELLS CDNA, RIKEN FULL-LENGTH ENRICHE FULL INSERT, mRNA sequence.    36  0.12  2
D17450|D17450.1 Mycoplasma salivarium gene for aminopeptidase, complete cds.    34  1.4  2
AP002899|AP002899.2 Oryza sativa genomic DNA, chromosome 1, PAC clone:P0456A01.    36  4.6  2
AP003142|AP003142.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435H01.    36  5.1  2
CD002652| ; putative ABC transporter; protein id: At4g04770.1, supported by cDNA: gi_15529142, supported by cDNA: gi_15912264 [Arabidopsis thaliana] [ E- value 8.00E-76 ], mRNA sequence.    36  5.1  2
BM413483|BM413483.1 EST587810 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG63B17 5' end, mRNA sequence.    36  7.1  2
BQ515072|BQ515072.1 EST622487 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMIP92 5' end, mRNA sequence.    36  7.2  2
BM411719|BM411719.1 EST586046 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG57P11 5' end, mRNA sequence.    36  7.8  2
AE003547|AE003547.3 Drosophila melanogaster chromosome 3L, section 38 of 83 of the complete sequence.    40  8.2  2
AX346848|AX346848.1 Sequence 1919 from Patent WO0200928.          42  8.8  1
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB899478_1(FB899478|pid:none) Sequence 118751 from Patent WO2008...    97   4e-19
EF144854_1(EF144854|pid:none) Populus trichocarpa clone WS01119_...    97   4e-19
AY857450_1(AY857450|pid:none) Suberites domuncula L35a mRNA, com...    97   4e-19
FB899466_1(FB899466|pid:none) Sequence 118739 from Patent WO2008...    97   5e-19
EF081514_1(EF081514|pid:none) Picea sitchensis clone WS02712_C06...    97   5e-19
FJ362592_1(FJ362592|pid:none) Vernicia fordii 60S ribosomal prot...    97   5e-19
(Q9FZH0) RecName: Full=60S ribosomal protein L35a-2;  &AC008046_...    96   7e-19
FB899468_1(FB899468|pid:none) Sequence 118741 from Patent WO2008...    96   7e-19
(P51422) RecName: Full=60S ribosomal protein L35a-4;  &AF446895_...    96   9e-19
(Q9C912) RecName: Full=60S ribosomal protein L35a-3;  &AC020579_...    96   1e-18
protein update 2009. 3.22
PSORT 

 psg: 0.70  gvh: 0.27  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.10
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for VSG169 is mit
5' end seq. ID VSG169F
5' end seq. 
>VSG169F.Seq
TACTCAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTACTCAATACCCAAACATCA
GTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGGTAAAA
AAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTT
CATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCA
GAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAACA
TCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTTGAAAAAAAAAA----------
Length of 5' end seq. 348
3' end seq. ID VSG169Z
3' end seq. 
>VSG169Z.Seq
----------AANATTTNCTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGNTAC
TCAATACCCAAACATCAGTTTAATCAAAAATGAAGGTGTTGTCTCACGTGAAGATTCAAC
TTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCC
AACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGT
CCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCNCAGTCAGAGTTAT
GTTATACCCATCAAACATCTAAATAAA
Length of 3' end seq. 317
Connected seq. ID VSG169P
Connected seq. 
>VSG169P.Seq
TACTCAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTACTCAATACCCAAACATCA
GTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGGTAAAA
AAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTT
CATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTTCGCCA
GAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAACA
TCTAAATAAATCTTTAAAACGAAAAAAAAAATTATTTGAAAAAAAAAA----------AA
NATTTNCTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGNTACTCAATACCCAAA
CATCAGTTTAATCAAAAATGAAGGTGTTGTCTCACGTGAAGATTCAACTTTTTATTTAGG
TAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAA
AATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTGTCCAAGCTCGTTT
CGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCNCAGTCAGAGTTATGTTATACCCATC
AAACATCTAAATAAA
Length of connected seq. 665
Full length Seq ID -
Full length Seq. -
Length of full length seq. -