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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG148
Library VS
(Link to library)
Clone ID VSG148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16494-1
Original site URL
Representative seq. ID VSG148P
(Link to Original site)
Representative DNA sequence 
>VSG148 (VSG148Q) /CSM/VS/VSG1-B/VSG148Q.Seq.d/
ATTTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACT
GATAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATC
TAAACGCCTCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTG
ATCTTTTGGACGTTTAACAAAAAAAAAAXXXXXXXXXXATTTTAGGCAAAAAGCAAAAGC
AAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATA
ACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTA
TGGAACATATCGATCATTATATTTTTAATAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
ilgkkqkqnrpvpqwirlrtdntirynnkrrhwrrtklgi*TPQCKLIGTYRSLYILIKL
IFWTFNKKK---

---ILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqcklmehidhyifn
k
Translated Amino Acid sequence (All Frames) 
Frame A:
ilgkkqkqnrpvpqwirlrtdntirynnkrrhwrrtklgi*TPQCKLIGTYRSLYILIKL
IFWTFNKKK---

---ILGKKQKQNRPVPQWIRLRTDNTIRYNNKRRHWRRTKLGI*tpqcklmehidhyifn
k

Frame B:
f*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsasllehidhyif**n*
sfgrltkkk---

---f*aksksktdqshngfv*elitpsdtitnvdigdvqslvskrlsaslwnisiiifli
k

Frame C:
frqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqaywnisiiiyfnkid
lldv*qkk---

---frqkakakqtsptmdsfkn**hhqiq*qt*tletykawylnasvqaygtyrslyf**
n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK412 (VSK412Q) /CSM/VS/VSK4-A/VSK412Q.Seq.d/                        392   e-108
VSK409 (VSK409Q) /CSM/VS/VSK4-A/VSK409Q.Seq.d/                        392   e-108
VSJ763 (VSJ763Q) /CSM/VS/VSJ7-C/VSJ763Q.Seq.d/                        392   e-108
VSJ544 (VSJ544Q) /CSM/VS/VSJ5-B/VSJ544Q.Seq.d/                        392   e-108
VSJ541 (VSJ541Q) /CSM/VS/VSJ5-B/VSJ541Q.Seq.d/                        392   e-108
VSJ417 (VSJ417Q) /CSM/VS/VSJ4-A/VSJ417Q.Seq.d/                        392   e-108
VSJ185 (VSJ185Q) /CSM/VS/VSJ1-D/VSJ185Q.Seq.d/                        392   e-108
VSI602 (VSI602Q) /CSM/VS/VSI6-A/VSI602Q.Seq.d/                        392   e-108
VSI566 (VSI566Q) /CSM/VS/VSI5-C/VSI566Q.Seq.d/                        392   e-108
VSI565 (VSI565Q) /CSM/VS/VSI5-C/VSI565Q.Seq.d/                        392   e-108
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL115377|AL115377.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL114313|AL114313.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL114405|AL114405.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL117142|AL117142.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL114232|AL114232.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL114078|AL114078.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL112311|AL112311.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL111373|AL111373.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL115802|AL115802.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
AL115145|AL115145.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    74  1e-09  1
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY961478_1(AY961478|pid:none) Phytophthora infestans clone MY-09...    79   4e-14
CP000583_325(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    79   6e-14
FM992688_598(FM992688|pid:none) Candida dubliniensis CD36 chromo...    77   2e-13
(Q96W55) RecName: Full=60S ribosomal protein L39; AltName: Full=...    77   2e-13
AF548327_1(AF548327|pid:none) Branchiostoma belcheri ribosomal p...    76   3e-13
(P62891) RecName: Full=60S ribosomal protein L39;  &(P62892) Rec...    75   5e-13
AY891846_1(AY891846|pid:none) Synthetic construct Homo sapiens c...    75   5e-13
(Q90YS9) RecName: Full=60S ribosomal protein L39;  &AF401596_1(A...    75   5e-13
(Q98TF5) RecName: Full=60S ribosomal protein L39;  &AB046397_1(A...    75   5e-13
AC009755_15(AC009755|pid:none) Arabidopsis thaliana chromosome I...    75   5e-13
protein update 2009. 3.22
PSORT 

 psg: 0.81  gvh: 0.37  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VSG148 is cyt
5' end seq. ID VSG148F
5' end seq. 
>VSG148F.Seq
ATTTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACT
GATAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATC
TAAACGCCTCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTG
ATCTTTTGGACGTTTAACAAAAAAAAAA----------
Length of 5' end seq. 208
3' end seq. ID VSG148Z
3' end seq. 
>VSG148Z.Seq
----------ATTTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCG
TTTAAGAACTGATAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAA
GCTTGGTATCTAAACGCCTCAGTGCAAGCTTATGGAACATATCGATCATTATATTTTTAA
TAAAAT
Length of 3' end seq. 176
Connected seq. ID VSG148P
Connected seq. 
>VSG148P.Seq
ATTTTAGGCAAAAAGCAAAAGCAAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACT
GATAACACCATCAGATACAATAACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATC
TAAACGCCTCAGTGCAAGCTTATTGGAACATATCGATCATTATATATTTTAATAAAATTG
ATCTTTTGGACGTTTAACAAAAAAAAAA----------ATTTTAGGCAAAAAGCAAAAGC
AAAACAGACCAGTCCCACAATGGATTCGTTTAAGAACTGATAACACCATCAGATACAATA
ACAAACGTAGACATTGGAGACGTACAAAGCTTGGTATCTAAACGCCTCAGTGCAAGCTTA
TGGAACATATCGATCATTATATTTTTAATAAAAT
Length of connected seq. 384
Full length Seq ID -
Full length Seq. -
Length of full length seq. -