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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG142
Library VS
(Link to library)
Clone ID VSG142
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09799-1
Original site URL
Representative seq. ID VSG142P
(Link to Original site)
Representative DNA sequence 
>VSG142 (VSG142Q) /CSM/VS/VSG1-B/VSG142Q.Seq.d/
CAAAAAAAAAAAATAAAAATTNTAAAAAAAATAATTATTTCTTNGTTTTAATTCATATNT
TCATTCACTCAAATNTTNGATTTAATCAATCTCTTAANTAAAAAAGGAAAAAAAAAAXXX
XXXXXXXTNAAATTTGANTTNNTCNTTCTTTTAAAAAAAAAAANAAAAAAAAAAAATTAT
TAATCCATCATCAATCAAAAATCAAATTAAAATAATCATAAATTTAAAAAAAAAAATTAA
TAAAATCAAGAAAAGCAATCATGATGCCTTTAGAAAGAGAGATATCAACATTGAAACAAT
ATTGTTTTCAATATTTATTAAGAAATCATGAAAAGATACCATCAAAAAAAGTATCACAAA
TTTATGAAATCTCAGATATTAGAGAAGAATTTATAAGTATGGCAAAGAAAAAGAATTTAG
TGGATGATCAATTCTTTTCAATTTTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
qkkkikixkkiiisxf*FIXSFTQXXDLINLLXKKGKKK---

---KFXXXXLLKKKXKKKNY*siinqksn*nnhkfkkkn**nqekqs*cl*keryqh*nn
ivfniy*eimkryhqkkyhkfmksqileknl*vwqrkri*wminsfqf
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkikixkkiiisxf*FIXSFTQXXDLINLLXKKGKKK---

---xnlxxsff*kkkxkkkiinpssiknqikiiinlkkkinkikksnhdafrkrdiniet
ilfsifikks*kdtikksitnl*nlry*rriykygkekefsg*silfnf

Frame B:
kkkk*kx*kk*lflxfnsyxhslkxxi*sis*xkkekk---

---xi*xxxsfkkkxkkkkllihhqskiklk*s*i*kkkliksrkaimmplereistlkq
ycfqyllrnhekipskkvsqiyeisdireefismakkknlvddqffsif

Frame C:
kkknknxkknnyfxvlihxfihsnxxfnqslx*krkkk---

---KFXXXXLLKKKXKKKNY*siinqksn*nnhkfkkkn**nqekqs*cl*keryqh*nn
ivfniy*eimkryhqkkyhkfmksqileknl*vwqrkri*wminsfqf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG142 (VSG142Q) /CSM/VS/VSG1-B/VSG142Q.Seq.d/                        428   e-119
VSF680 (VSF680Q) /CSM/VS/VSF6-D/VSF680Q.Seq.d/                         36   0.43
SSB604 (SSB604Q) /CSM/SS/SSB6-A/SSB604Q.Seq.d/                         36   0.43
SLC440 (SLC440Q) /CSM/SL/SLC4-B/SLC440Q.Seq.d/                         36   0.43
SLA895 (SLA895Q) /CSM/SL/SLA8-D/SLA895Q.Seq.d/                         36   0.43
FCL-AC23 (FCL-AC23Q) /CSM/FCL/FCL-AC/FCL-AC23Q.Seq.d/                  36   0.43
VSK145 (VSK145Q) /CSM/VS/VSK1-B/VSK145Q.Seq.d/                         34   1.7
VSF888 (VSF888Q) /CSM/VS/VSF8-D/VSF888Q.Seq.d/                         34   1.7
VSF337 (VSF337Q) /CSM/VS/VSF3-B/VSF337Q.Seq.d/                         34   1.7
VSD377 (VSD377Q) /CSM/VS/VSD3-D/VSD377Q.Seq.d/                         34   1.7
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX344782|AX344782.1 Sequence 207 from Patent WO0200927.           48  0.093  1
CC086520|CC086520.1 CSU-K33r.17H18.T7 CSU-K33r Aedes aegypti genomic clone CSU-K33r.17H18, DNA sequence.    34  0.13  3
BX569033|BX569033.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse97b05_p1c.    40  0.62  2
BX560654|BX560654.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse50d03_p1c.    40  0.78  2
BI493759|BI493759.1 df105c03.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2538604 5', mRNA sequence.    30  0.95  3
BH404653|BH404653.1 AG-ND-178J7.TF ND-TAM Anopheles gambiae genomic clone AG-ND-178J7, DNA sequence.    28  0.98  4
AL831771|AL831771.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-336F13.    34  1.00  5
AW022714|AW022714.1 df42f12.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2486159 5', mRNA sequence.    30  1.3  3
AW021315|AW021315.1 df20g04.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2484295 5', mRNA sequence.    30  1.3  3
AW021457|AW021457.1 df23h01.y1 Morton Fetal Cochlea Homo sapiens cDNA clone IMAGE:2484336 5', mRNA sequence.    30  1.3  3
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G21) RecName: Full=FK506-binding protein 5;          EC=5.2....    32   6.6
protein update 2009. 3.22
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.58  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSG142 is nuc
5' end seq. ID VSG142F
5' end seq. 
>VSG142F.Seq
CAAAAAAAAAAAATAAAAATTNTAAAAAAAATAATTATTTCTTNGTTTTAATTCATATNT
TCATTCACTCAAATNTTNGATTTAATCAATCTCTTAANTAAAAAAGGAAAAAAAAAA---
-------
Length of 5' end seq. 117
3' end seq. ID VSG142Z
3' end seq. 
>VSG142Z.Seq
----------TNAAATTTGANTTNNTCNTTCTTTTAAAAAAAAAAANAAAAAAAAAAAAT
TATTAATCCATCATCAATCAAAAATCAAATTAAAATAATCATAAATTTAAAAAAAAAAAT
TAATAAAATCAAGAAAAGCAATCATGATGCCTTTAGAAAGAGAGATATCAACATTGAAAC
AATATTGTTTTCAATATTTATTAAGAAATCATGAAAAGATACCATCAAAAAAAGTATCAC
AAATTTATGAAATCTCAGATATTAGAGAAGAATTTATAAGTATGGCAAAGAAAAAGAATT
TAGTGGATGATCAATTCTTTTCAATTTTT
Length of 3' end seq. 319
Connected seq. ID VSG142P
Connected seq. 
>VSG142P.Seq
CAAAAAAAAAAAATAAAAATTNTAAAAAAAATAATTATTTCTTNGTTTTAATTCATATNT
TCATTCACTCAAATNTTNGATTTAATCAATCTCTTAANTAAAAAAGGAAAAAAAAAA---
-------TNAAATTTGANTTNNTCNTTCTTTTAAAAAAAAAAANAAAAAAAAAAAATTAT
TAATCCATCATCAATCAAAAATCAAATTAAAATAATCATAAATTTAAAAAAAAAAATTAA
TAAAATCAAGAAAAGCAATCATGATGCCTTTAGAAAGAGAGATATCAACATTGAAACAAT
ATTGTTTTCAATATTTATTAAGAAATCATGAAAAGATACCATCAAAAAAAGTATCACAAA
TTTATGAAATCTCAGATATTAGAGAAGAATTTATAAGTATGGCAAAGAAAAAGAATTTAG
TGGATGATCAATTCTTTTCAATTTTT
Length of connected seq. 436
Full length Seq ID -
Full length Seq. -
Length of full length seq. -