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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG132
Library VS
(Link to library)
Clone ID VSG132
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16169-1
Original site URL
Representative seq. ID VSG132P
(Link to Original site)
Representative DNA sequence 
>VSG132 (VSG132Q) /CSM/VS/VSG1-B/VSG132Q.Seq.d/
AAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAAC
AATGCTCAAACTACATCAAAGCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATC
AATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTG
CTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAA
TTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTT
CATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAA
TGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGA
AAATTTACATCAAATAAATTTAATAATTAAATAATTTAAGTTGTAAAAAGAAAAAAAAAA
XXXXXXXXXXAAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTNAAGTC
ATTGCTCAACAATGCTCAAACTACATCAAAGCCAACAAANCCGAATCTGAAATCGTTGGT
CTCCTCGATCAATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTT
GCCAGCTCTGCTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTT
TGTACCGAAATTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCT
GAAGAATCTTCATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTAC
TCNGGTTCAATGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCG
GAAACATGAAAATTTACATCAAATAAATTTAATAATTAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
ieepvqgelecgvceviaqqcsnyikankteseivglldqfcstlsifesacdtivassa
pkiinlllqnqsatvvcteigfcgnsssgnnnhssseesssssqpssssessessysgsm
tgassgsasgsgsgtsgnmkiyik*i**LNNLSCKKKKK---

---IEEPVQGELECGVCXVIAQQCSNYIKANKXESEIVGLLDQFCSTLSIFESACDTIVA
SSAPKIINLLLQNQSATVVCTEIGFCGNSSSGNNNHSSSEESSSSSQPSSSSESSESSYS
GSMTGASSGSASGSGSGTSET*kftsnkfnn*
Translated Amino Acid sequence (All Frames) 
Frame A:
ksknqskvn*nvvfvksllnnaqttskptkpnlkslvssinsvqlfqslkvlvipslpal
lqrsstysyktkvql*fvpklasvvtlhqvittihhlknlhhlpnhhhllnhqnqvtlvq
*lvlhlvqlqvqvqvhlet*kftsnkfnn*ii*vvkrkkk---

---ksknqskvn*nvvfvksllnnaqttskptxpnlkslvssinsvqlfqslkvlvipsl
pallqrsstysyktkvql*fvpklasvvtlhqvittihhlknlhhlpnhhhllnhqnqvt
xvq*lvlhlvqlqvqvqvhrkhenlhqinliik

Frame B:
nrrtspr*irmwcl*shcstmlklhqsqqnri*nrwsprsilfnsfnl*kcl*yhrcqlc
skdhqltltkpkcncslyrnwllw*lfir**qpfii*rifiifptiiif*iirikllwfn
dwcfiwfsfrfrfryiwkhenlhqinliik*fkl*kekk---

---nrrtspr*irmwclxshcstmlklhqsqqxri*nrwsprsilfnsfnl*kcl*yhrc
qlcskdhqltltkpkcncslyrnwllw*lfir**qpfii*rifiifptiiif*iirikll
xfndwcfiwfsfrfrfryignmkiyik*i**l

Frame C:
ieepvqgelecgvceviaqqcsnyikankteseivglldqfcstlsifesacdtivassa
pkiinlllqnqsatvvcteigfcgnsssgnnnhssseesssssqpssssessessysgsm
tgassgsasgsgsgtsgnmkiyik*i**LNNLSCKKKKK---

---IEEPVQGELECGVCXVIAQQCSNYIKANKXESEIVGLLDQFCSTLSIFESACDTIVA
SSAPKIINLLLQNQSATVVCTEIGFCGNSSSGNNNHSSSEESSSSSQPSSSSESSESSYS
GSMTGASSGSASGSGSGTSET*kftsnkfnn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG132 (VSG132Q) /CSM/VS/VSG1-B/VSG132Q.Seq.d/                        920   0.0
VSC449 (VSC449Q) /CSM/VS/VSC4-C/VSC449Q.Seq.d/                        920   0.0
SLF118 (SLF118Q) /CSM/SL/SLF1-A/SLF118Q.Seq.d/                        920   0.0
SLE371 (SLE371Q) /CSM/SL/SLE3-C/SLE371Q.Seq.d/                        920   0.0
FCL-AB23 (FCL-AB23Q) /CSM/FCL/FCL-AB/FCL-AB23Q.Seq.d/                 920   0.0
VSE128 (VSE128Q) /CSM/VS/VSE1-B/VSE128Q.Seq.d/                        912   0.0
VFL608 (VFL608Q) /CSM/VF/VFL6-A/VFL608Q.Seq.d/                        884   0.0
VSJ275 (VSJ275Q) /CSM/VS/VSJ2-D/VSJ275Q.Seq.d/                        876   0.0
VSI312 (VSI312Q) /CSM/VS/VSI3-A/VSI312Q.Seq.d/                        864   0.0
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                        854   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY223858|AY223858.1 Trypanosoma evansi clone ShTat1.3 procyclin EP2 (EP2) gene, complete cds.    52  1e-09  2
BX558403|BX558403.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse38d05_q1c.    52  2e-09  2
BX564787|BX564787.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse73f11_q1c.    52  2e-09  2
X04814|X04814.1 Trypanosoma brucei mRNA for procyclic form specific polypeptide with dipeptide repeat.    52  2e-09  2
AF353632|AF353632.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-2 allele, complete cds.    52  2e-09  2
AF353631|AF353631.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-1 allele, complete cds.    52  2e-09  2
X52584|X52584.1 T. brucei PARP-A locus for PARP-A alpha and beta proteins.    52  9e-09  2
M33129|M33129.1 T.brucei procyclic acidic repetitive protein A.alpha and A.beta (parp-A.alpha and parp-A.beta) genes, complete cds.    52  9e-09  2
BX558757|BX558757.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse3e12_q1c.    46  6e-08  2
BX553008|BX553008.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse126g07_q1c.    46  9e-08  2
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB170870_1(AB170870|pid:none) Macaca fascicularis brain cDNA clo...    56   2e-06
AB169527_1(AB169527|pid:none) Macaca fascicularis brain cDNA, cl...    56   2e-06
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ...    55   2e-06
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    55   4e-06
AK223290_1(AK223290|pid:none) Homo sapiens mRNA for prosaposin (...    55   4e-06
CR861454_1(CR861454|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    55   4e-06
M60258_1(M60258|pid:none) Human mutant cerebroside sulfate activ...    55   4e-06
AX704807_1(AX704807|pid:none) Sequence 39 from Patent WO03014151.      55   4e-06
AK299184_1(AK299184|pid:none) Homo sapiens cDNA FLJ54136 complet...    55   4e-06
(Q6IBQ6) RecName: Full=Proactivator polypeptide; Contains:   Rec...    55   4e-06
protein update 2009. 3.22
PSORT 

 psg: 0.52  gvh: 0.52  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSG132 is nuc
5' end seq. ID VSG132F
5' end seq. 
>VSG132F.Seq
AAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAAC
AATGCTCAAACTACATCAAAGCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATC
AATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTG
CTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAA
TTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTT
CATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAA
TGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGA
AAATTTACATCAAATAAATTTAATAATTAAATAATTTAAGTTGTAAAAAGAAAAAAAAAA
----------
Length of 5' end seq. 480
3' end seq. ID VSG132Z
3' end seq. 
>VSG132Z.Seq
----------AAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTNAAGTC
ATTGCTCAACAATGCTCAAACTACATCAAAGCCAACAAANCCGAATCTGAAATCGTTGGT
CTCCTCGATCAATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTT
GCCAGCTCTGCTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTT
TGTACCGAAATTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCT
GAAGAATCTTCATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTAC
TCNGGTTCAATGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCG
GAAACATGAAAATTTACATCAAATAAATTTAATAATTAAA
Length of 3' end seq. 450
Connected seq. ID VSG132P
Connected seq. 
>VSG132P.Seq
AAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTGAAGTCATTGCTCAAC
AATGCTCAAACTACATCAAAGCCAACAAAACCGAATCTGAAATCGTTGGTCTCCTCGATC
AATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTTGCCAGCTCTG
CTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTTTGTACCGAAA
TTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCTGAAGAATCTT
CATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTACTCTGGTTCAA
TGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCTGGAAACATGA
AAATTTACATCAAATAAATTTAATAATTAAATAATTTAAGTTGTAAAAAGAAAAAAAAAA
----------AAATCGAAGAACCAGTCCAAGGTGAATTAGAATGTGGTGTTTGTNAAGTC
ATTGCTCAACAATGCTCAAACTACATCAAAGCCAACAAANCCGAATCTGAAATCGTTGGT
CTCCTCGATCAATTCTGTTCAACTCTTTCAATCTTTGAAAGTGCTTGTGATACCATCGTT
GCCAGCTCTGCTCCAAAGATCATCAACTTACTCTTACAAAACCAAAGTGCAACTGTAGTT
TGTACCGAAATTGGCTTCTGTGGTAACTCTTCATCAGGTAATAACAACCATTCATCATCT
GAAGAATCTTCATCATCTTCCCAACCATCATCATCTTCTGAATCATCAGAATCAAGTTAC
TCNGGTTCAATGACTGGTGCTTCATCTGGTTCAGCTTCAGGTTCAGGTTCAGGTACATCG
GAAACATGAAAATTTACATCAAATAAATTTAATAATTAAA
Length of connected seq. 930
Full length Seq ID -
Full length Seq. -
Length of full length seq. -