VSG126
Library VS
(Link to library)
Clone ID VSG126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VSG126F
(Link to Original site)
Representative DNA sequence
>VSG126 (VSG126Q) /CSM/VS/VSG1-B/VSG126Q.Seq.d/
AAAAAAAAGATTTTCATCCCTTCCATCCTTTTTTTTTTTTTAATAATCAATTTTNCXXXX
XXXXXX
sequence update 2001. 3.22
Translated Amino Acid sequence
KKKIFIPSILFFFLIINF---


Translated Amino Acid sequence (All Frames)
Frame A:
KKKIFIPSILFFFLIINF---


Frame B:
kkrfsslpsffff**six---


Frame C:
kkdfhpfhpffffnnqf---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG126 (VSG126Q) /CSM/VS/VSG1-B/VSG126Q.Seq.d/ 56 5e-08
SSK643 (SSK643Q) /CSM/SS/SSK6-B/SSK643Q.Seq.d/ 32 0.79
SSE780 (SSE780Q) /CSM/SS/SSE7-D/SSE780Q.Seq.d/ 32 0.79
SSB524 (SSB524Q) /CSM/SS/SSB5-A/SSB524Q.Seq.d/ 32 0.79
VFM122 (VFM122Q) /CSM/VF/VFM1-A/VFM122Q.Seq.d/ 30 3.1
VFA243 (VFA243Q) /CSM/VF/VFA2-B/VFA243Q.Seq.d/ 30 3.1
SSM629 (SSM629Q) /CSM/SS/SSM6-B/SSM629Q.Seq.d/ 30 3.1
SSL824 (SSL824Q) /CSM/SS/SSL8-A/SSL824Q.Seq.d/ 30 3.1
SSK718 (SSK718Q) /CSM/SS/SSK7-A/SSK718Q.Seq.d/ 30 3.1
SSF646 (SSF646Q) /CSM/SS/SSF6-B/SSF646Q.Seq.d/ 30 3.1

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BB412121|BB412121.1 Mus musculus 7 days embryo cDNA, RIKEN full-length enriched library, clone:C430025M03, 3' end partial sequence. 42 0.61 1
AC084366|AC084366.2 Homo sapiens chromosome UNK clone RP11-219L7, WORKING DRAFT SEQUENCE, 32 unordered pieces. 40 2.4 1
CB350509|CB350509.1 P3E12 Cotton fiber subtracted cDNA library Gossypium hirsutum cDNA, mRNA sequence. 32 5.4 2
BZ188584|BZ188584.1 CH230-341G13.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-341G13, DNA sequence. 32 6.2 2
AC101498|AC101498.1 Mus musculus clone RP23-189G3, LOW-PASS SEQUENCE SAMPLING. 32 9.4 2
AC127040|AC127040.3 Rattus norvegicus clone CH230-194D4, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 38 9.5 1
AL365496|AL365496.15 Human DNA sequence from clone RP11-449J3 on chromosome 10. 38 9.5 1
AC124205|AC124205.4 Rattus norvegicus clone CH230-102H1, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 9.5 1
B17161|B17161.1 344J3.TVB CIT978SKA1 Homo sapiens genomic clone A-344J03, genomic survey sequence. 38 9.5 1
AL198351|AL198351.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 140P09 of library G from Tetraodon nigroviridis. 38 9.5 1
dna update 2003. 8.24
Homology vs Protein

***** No hits found ******

Lambda K H
0.284 0.106 0.239

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 21,788,789
protein update 2009. 3.22
PSORT -
5' end seq. ID VSG126F
5' end seq.
>VSG126F.Seq
AAAAAAAAGATTTTCATCCCTTCCATCCTTTTTTTTTTTTTAATAATCAATTTTNC----
------
Length of 5' end seq. 56
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -