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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG112
Library VS
(Link to library)
Clone ID VSG112
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11048-1
Original site URL
Representative seq. ID VSG112P
(Link to Original site)
Representative DNA sequence 
>VSG112 (VSG112Q) /CSM/VS/VSG1-A/VSG112Q.Seq.d/
CAAAGNAGTTTAAAAGTTTTATTATCAAATCCACCCATCAACAGAGTAAAGCCCTCTTCA
ACAATTATTCAACCACTTTCAAATACTACTACAACAACAATAATTAATAATAATAATATA
ACTAATTTTGAAAAAAATGACACATAAAAAATCTATGACAATTGATAATATTTGCCAAAA
TGTAAGAAATGCACAATATGCAGTACGTGGTGAATTAGTTATTCGTGCAGAAGCAATTTC
ACATCAATTACAAAAACAAAAAACAGAAGGCACAAAAACATTACCATTTGAAGAGATTGT
CTATTGTAATATTGGTAATCCACAACAATTGAAACAAAAACCATTAACTTATTTCCGTCA
AGTTGTATCATTAGTTGAATGTCCAGXXXXXXXXXXAGATATGGGTGGTGATTATGCAGA
TTTAGAGATGGTTTCATTCCATTCAGTTAGTAAAGGTTTCGTTGGTGAATGTGGTAAACG
TGGTGGTTATATGGAATTAAATGGTGTCACTCAAGATGTTAAAGCTGAAATTTATAAACT
CGCATCAATTGGTTTATGTCCAAATGTTATTGGTCAATTGGTTGTTGATTTAATGGTTCG
TCCACCAGTTGCTGGTGAACAATCACATGATCTCTACCTTAAAGAAAGAGATAATATCTA
TGAATCTTTAAAAAAACGTGCAAATCTCTTAACAAATGCTTTAAATAATCTTGAAGGTGT
AACTTGTAATCCATCAGAAGGTGCAATGTATGCTTTCCCACAAATTCGTCTTCCAGCTAA
AGCTGTAGAATATGCAAATTCAATTGGTAAAGCACCAGATGCTTACTATTGTATTCAATT
ACTCGAAGCCACTGGTATCTGTGTTGTACCAGGTAGTGGTTTCGGTCAAAAAGATGGTAC
TTGGCATTTTAGAACTACCTTCTTACCTTCTGAAGAAGCAATTGAAGGTGTTTGTAAGAG
AATCGCTGATTTCCATCAATCATTTATNAATAAATATAAATAAATAATTTAAATAATAAT
AAAANAAAAAAATAAAANATATANATA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kxv*kfyyqihpste*splqqlfnhfqillqqq*liiii*LILKKMTHKKSMTIDNICQN
VRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQKPLTYFRQ
VVSLVECP---

---DMGGDYADLEMVSFHSVSKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNV
IGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAM
YAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLP
SEEAIEGVCKRIADFHQSFXNKYK*ii*iiikxknkxyx
Translated Amino Acid sequence (All Frames) 
Frame A:
qxslkvllsnppinrvkpsstiiqplsntttttiinnnnitnfekndt*kiydn**ylpk
ckkcticstw*isyscrsnftsitktknrrhkniti*rdcll*yw*sttietktinlfps
sciis*ms---

---rygw*lcrfrdgfipfs**rfrw*mw*twwlygikwchsrc*s*nl*trinwfmskc
ywsigc*fngsstscw*tit*slp*rkr*yl*ifkktckslnkcfk*s*rcnl*sirrcn
vcfptnssss*scrickfnw*strclllysitrshwylcctr*wfrskrwylaf*nyllt
f*rsn*rcl*enr*fpsiiyx*i*innlnnnkxkk*xixi

Frame B:
kxv*kfyyqihpste*splqqlfnhfqillqqq*liiii*LILKKMTHKKSMTIDNICQN
VRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQKPLTYFRQ
VVSLVECP---

---DMGGDYADLEMVSFHSVSKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNV
IGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAM
YAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLP
SEEAIEGVCKRIADFHQSFXNKYK*ii*iiikxknkxyx

Frame C:
kxfksfiiksthqqskalfnnysttfkyyynnnn****yn*f*kk*hiknl*qliifakm
*emhnmqyvvn*lfvqkqfhinyknkkqkaqkhyhlkrlsivilvihnn*nknh*lisvk
lyh*lnvq---

---iwvvimqi*rwfhsiqlvkvslvnvvnvvviwn*mvslkmlklkfinshqlvyvqml
lvnwlli*wfvhqllvnnhmistlkkeiismnl*knvqis*qml*iilkv*lvihqkvqc
mlshkfvfqlkl*nmqiqlvkhqmltivfnyskplvsvlyqvvvsvkkmvlgilelpsyl
lkkqlkvfvreslisinhlxinink*fk***xkkikxix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG112 (VSG112Q) /CSM/VS/VSG1-A/VSG112Q.Seq.d/                       1507   0.0
AFL481 (AFL481Q) /CSM/AF/AFL4-D/AFL481Q.Seq.d/                       1124   0.0
CHO261 (CHO261Q) /CSM/CH/CHO2-C/CHO261Q.Seq.d/                       1106   0.0
VFI809 (VFI809Q) /CSM/VF/VFI8-A/VFI809Q.Seq.d/                        995   0.0
VFM728 (VFM728Q) /CSM/VF/VFM7-B/VFM728Q.Seq.d/                        539   e-152
VFN614 (VFN614Q) /CSM/VF/VFN6-A/VFN614Q.Seq.d/                        408   e-113
SSM358 (SSM358Q) /CSM/SS/SSM3-C/SSM358Q.Seq.d/                         38   0.26
SHC296 (SHC296Q) /CSM/SH/SHC2-D/SHC296Q.Seq.d/                         38   0.26
SFD878 (SFD878Q) /CSM/SF/SFD8-D/SFD878Q.Seq.d/                         38   0.26
VHO167 (VHO167Q) /CSM/VH/VHO1-C/VHO167Q.Seq.d/                         36   1.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL407784|AL407784.1 T3 end of clone AV0AA004E07 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    52  6e-07  3
AL408836|AL408836.1 T3 end of clone AV0AA010H12 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    52  8e-07  3
AU299513|AU299513.1 Cryptomeria japonica mRNA, clone: CM1036, 5' end, expressed in male cone.    48  1e-04  2
BG734274|T34028 hypothetical protein C32F10.8 - Caenorhabditis elegans, mRNA sequence.    38  0.006  2
Z73261|Z73261.1 S.cerevisiae chromosome XII reading frame ORF YLR089c.    44  0.011  3
AL440227|AL440227.1 T7 end of clone BD0AA010H05 of library BD0AA from strain CBS 94 of  Candida tropicalis.    52  0.014  1
AL438964|AL438964.1 T7 end of clone BD0AA001E08 of library BD0AA from strain CBS 94 of  Candida tropicalis.    52  0.014  1
BE598850|BE598850.1 PI1_84_B11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.    42  0.068  2
BE597433|BE597433.1 PI1_69_E01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence.    42  0.072  2
AZ683817|AZ683817.1 ENTKE73TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.12  2
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MJ7) RecName: Full=Probable alanine aminotransferase, mitoch...   390   e-107
AY035086_1(AY035086|pid:none) Arabidopsis thaliana putative alan...   229   1e-58
AC016529_20(AC016529|pid:none) Arabidopsis thaliana chromosome 1...   229   1e-58
AP008209_540(AP008209|pid:none) Oryza sativa (japonica cultivar-...   227   4e-58
AY664415_3(AY664415|pid:none) Zea mays cultivar B73 locus 9009, ...   224   3e-57
AC079936_10(AC079936|pid:none) Oryza sativa (japonica cultivar-g...   221   2e-56
(P34106) RecName: Full=Alanine aminotransferase 2;          Shor...   219   9e-56
EU165371_1(EU165371|pid:none) Glycine max alanine aminotransfera...   219   1e-55
AC151666_16(AC151666|pid:none) Medicago truncatula clone mth2-30...   219   1e-55
AF055898_1(AF055898|pid:none) Zea mays alanine aminotransferase ...   219   2e-55
protein update 2009. 3.22
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VSG112 is cyt
5' end seq. ID VSG112F
5' end seq. 
>VSG112F.Seq
CAAAGNAGTTTAAAAGTTTTATTATCAAATCCACCCATCAACAGAGTAAAGCCCTCTTCA
ACAATTATTCAACCACTTTCAAATACTACTACAACAACAATAATTAATAATAATAATATA
ACTAATTTTGAAAAAAATGACACATAAAAAATCTATGACAATTGATAATATTTGCCAAAA
TGTAAGAAATGCACAATATGCAGTACGTGGTGAATTAGTTATTCGTGCAGAAGCAATTTC
ACATCAATTACAAAAACAAAAAACAGAAGGCACAAAAACATTACCATTTGAAGAGATTGT
CTATTGTAATATTGGTAATCCACAACAATTGAAACAAAAACCATTAACTTATTTCCGTCA
AGTTGTATCATTAGTTGAATGTCCAG----------
Length of 5' end seq. 386
3' end seq. ID VSG112Z
3' end seq. 
>VSG112Z.Seq
----------AGATATGGGTGGTGATTATGCAGATTTAGAGATGGTTTCATTCCATTCAG
TTAGTAAAGGTTTCGTTGGTGAATGTGGTAAACGTGGTGGTTATATGGAATTAAATGGTG
TCACTCAAGATGTTAAAGCTGAAATTTATAAACTCGCATCAATTGGTTTATGTCCAAATG
TTATTGGTCAATTGGTTGTTGATTTAATGGTTCGTCCACCAGTTGCTGGTGAACAATCAC
ATGATCTCTACCTTAAAGAAAGAGATAATATCTATGAATCTTTAAAAAAACGTGCAAATC
TCTTAACAAATGCTTTAAATAATCTTGAAGGTGTAACTTGTAATCCATCAGAAGGTGCAA
TGTATGCTTTCCCACAAATTCGTCTTCCAGCTAAAGCTGTAGAATATGCAAATTCAATTG
GTAAAGCACCAGATGCTTACTATTGTATTCAATTACTCGAAGCCACTGGTATCTGTGTTG
TACCAGGTAGTGGTTTCGGTCAAAAAGATGGTACTTGGCATTTTAGAACTACCTTCTTAC
CTTCTGAAGAAGCAATTGAAGGTGTTTGTAAGAGAATCGCTGATTTCCATCAATCATTTA
TNAATAAATATAAATAAATAATTTAAATAATAATAAAANAAAAAAATAAAANATATANAT
A
Length of 3' end seq. 651
Connected seq. ID VSG112P
Connected seq. 
>VSG112P.Seq
CAAAGNAGTTTAAAAGTTTTATTATCAAATCCACCCATCAACAGAGTAAAGCCCTCTTCA
ACAATTATTCAACCACTTTCAAATACTACTACAACAACAATAATTAATAATAATAATATA
ACTAATTTTGAAAAAAATGACACATAAAAAATCTATGACAATTGATAATATTTGCCAAAA
TGTAAGAAATGCACAATATGCAGTACGTGGTGAATTAGTTATTCGTGCAGAAGCAATTTC
ACATCAATTACAAAAACAAAAAACAGAAGGCACAAAAACATTACCATTTGAAGAGATTGT
CTATTGTAATATTGGTAATCCACAACAATTGAAACAAAAACCATTAACTTATTTCCGTCA
AGTTGTATCATTAGTTGAATGTCCAG----------AGATATGGGTGGTGATTATGCAGA
TTTAGAGATGGTTTCATTCCATTCAGTTAGTAAAGGTTTCGTTGGTGAATGTGGTAAACG
TGGTGGTTATATGGAATTAAATGGTGTCACTCAAGATGTTAAAGCTGAAATTTATAAACT
CGCATCAATTGGTTTATGTCCAAATGTTATTGGTCAATTGGTTGTTGATTTAATGGTTCG
TCCACCAGTTGCTGGTGAACAATCACATGATCTCTACCTTAAAGAAAGAGATAATATCTA
TGAATCTTTAAAAAAACGTGCAAATCTCTTAACAAATGCTTTAAATAATCTTGAAGGTGT
AACTTGTAATCCATCAGAAGGTGCAATGTATGCTTTCCCACAAATTCGTCTTCCAGCTAA
AGCTGTAGAATATGCAAATTCAATTGGTAAAGCACCAGATGCTTACTATTGTATTCAATT
ACTCGAAGCCACTGGTATCTGTGTTGTACCAGGTAGTGGTTTCGGTCAAAAAGATGGTAC
TTGGCATTTTAGAACTACCTTCTTACCTTCTGAAGAAGCAATTGAAGGTGTTTGTAAGAG
AATCGCTGATTTCCATCAATCATTTATNAATAAATATAAATAAATAATTTAAATAATAAT
AAAANAAAAAAATAAAANATATANATA
Length of connected seq. 1037
Full length Seq ID -
Full length Seq. -
Length of full length seq. -