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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSG102
Library VS
(Link to library)
Clone ID VSG102
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14883-1
Original site URL
Representative seq. ID VSG102P
(Link to Original site)
Representative DNA sequence 
>VSG102 (VSG102Q) /CSM/VS/VSG1-A/VSG102Q.Seq.d/
GTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGATCTATCAAAAGAAGAGATTGAA
CAACGTTCAAAAATCGAAAAGAAAACTTTAGCAACTCATCGTTTAACAAATGATACCTCA
CTTGTTGTAGAGGATTATAATCAAGATTTTCAAATAACAATCACTATTCAACATACTACA
GATTTCGATGAAGATACTAAAAAATTAAAAAAACAACAACAAAAAGAAAAAGATCAAAAA
GAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGATAAATTCTTTGAAATTATTGGT
AAAACTTCTCAAACAACAACAACAACAACAACCACAACAACAACTACAGAATCTGACAAT
AATAGTAATAATAATAAAAATAATAATAATAATAATGATGTTGAAGAGGATGATGGTTTT
ATGTTTATTGAAGACCAACCATCATCCACAACTACTTCATCTGCAACACCATCAATTAGT
AAGAAGAGAAAAGAAATTGATACAAATGAATCTGAAGATTTAGATTCCTCTAAAAAATTA
AAATCAAATTTACAAGACTAAAAAAAAATAATAAATTAAAATTTTAACTAAAAAAAAAAX
XXXXXXXXXCCANGCGTCCGGTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGATC
TATCAAAAGAAGAGATTGATCAACGTTCAAAAATNGAAAAGAAAACTTTAGCAACTCATC
GTTTAACAAATGATACCTCACTTGTTGTAGAGGATTATAATCAAGATTTTCAAATANCAA
TCACTATTCAACATACTNCAGATTTCGATGAAGATACTAAAAAATTNANAAAACAACAAC
AAAAAGAAAAAGATCAAAAAGAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGATA
AATTCTTTGAAATTNTTGGTAAAACTTCTCAACCAACGACAGCNACANCAACCNCAACAA
CAACTACAGAATCTGNCAATAATAGTAATAATAATAAAAATAATAATAATAATAATGATG
TTGAAGAGGATGATGGTTTTATGTTTATTGAAGACCANCCATCATCCACANCTACTTCAT
CTGCAACACCATCNATTAGTAAGAAGAGAAAAGAAATTGATACACAATGAATCTGAAGAT
TTAGATTCCTCTAAAAAATTAAAATCAAATTTACAAGACTAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
lvmi*smkvvikiyqkkrlnnvqkskrkl*qliv*qmiphll*riiikifk*qslfnilq
ismkilkn*knnnkkkkikkkvkllqlkkkkminslkllvkllkqqqqqqpqqqlqnlti
iviiikiiiiimmlkrmmvlcllktnhhpqllhlqhhqlvrrekkliqmnlki*iplkn*
nqiyktkkk**IKILTKKK---

---XRPVGNDIIYEGGDQDLSKEEIDQRSKXEKKTLATHRLTNDTSLVVEDYNQDFQIXI
TIQHTXDFDEDTKKXXKQQQKEKDQKEGKTTTIEKEEDDKFFEIXGKTSQPTTATXTXTT
TTESXNNSNNNKNNNNNNDVEEDDGFMFIEDXPSSTXTSSATPSISKKRKEIDTQ*i*rf
rfl*kikikftrlkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vgndiiyeggdqdlskeeieqrskiekktlathrltndtslvvedynqdfqititiqhtt
dfdedtkklkkqqqkekdqkegktttiekeeddkffeiigktsqttttttttttttesdn
nsnnnknnnnnndveeddgfmfiedqpsstttssatpsiskkrkeidtnesedldsskkl
ksnlqd*kkiin*nfn*kk---

---pxvrlvmi*smkvvikiyqkkrlinvqkxkrkl*qliv*qmiphll*riiikifkxq
slfnilqismkilknxxnnnkkkkikkkvkllqlkkkkminslkxlvkllnqrqxxqpqq
qlqnlxiiviiikiiiiimmlkrmmvlcllktxhhpxllhlqhhxlvrrekklihnesed
ldsskklksnlqd*k

Frame B:
lvmi*smkvvikiyqkkrlnnvqkskrkl*qliv*qmiphll*riiikifk*qslfnilq
ismkilkn*knnnkkkkikkkvkllqlkkkkminslkllvkllkqqqqqqpqqqlqnlti
iviiikiiiiimmlkrmmvlcllktnhhpqllhlqhhqlvrrekkliqmnlki*iplkn*
nqiyktkkk**IKILTKKK---

---xasgw**ynl*rw*srsikrrd*stfknxkenfsnssfnk*yltccrgl*srfsnxn
hystyxrfr*ry*kixktttkrkrskrr*nyyn*krrr**il*nxw*nfstndsxxnxnn
nyrixq******k******c*rg*wfyvy*rpxiihxyficntix**eekrn*ytmnlki
*iplkn*nqiyktkk

Frame C:
w**ynl*rw*srsikrrd*ttfknrkenfsnssfnk*yltccrgl*srfsnnnhystyyr
fr*ry*kikktttkrkrskrr*nyyn*krrr**il*nyw*nfsnnnnnnnhnnnyri*q*
*****k******c*rg*wfyvy*rptiihnyficntin**eekrn*yk*i*rfrfl*kik
ikftrlkknnklkf*lkkk---

---XRPVGNDIIYEGGDQDLSKEEIDQRSKXEKKTLATHRLTNDTSLVVEDYNQDFQIXI
TIQHTXDFDEDTKKXXKQQQKEKDQKEGKTTTIEKEEDDKFFEIXGKTSQPTTATXTXTT
TTESXNNSNNNKNNNNNNDVEEDDGFMFIEDXPSSTXTSSATPSISKKRKEIDTQ*i*rf
rfl*kikikftrlkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG102 (VSG102Q) /CSM/VS/VSG1-A/VSG102Q.Seq.d/                        391   e-107
VHO886 (VHO886Q) /CSM/VH/VHO8-D/VHO886Q.Seq.d/                        391   e-107
CHM317 (CHM317Q) /CSM/CH/CHM3-A/CHM317Q.Seq.d/                        391   e-107
VSJ424 (VSJ424Q) /CSM/VS/VSJ4-A/VSJ424Q.Seq.d/                         44   0.005
VSG214 (VSG214Q) /CSM/VS/VSG2-A/VSG214Q.Seq.d/                         44   0.005
SSI670 (SSI670Q) /CSM/SS/SSI6-C/SSI670Q.Seq.d/                         44   0.005
SSE427 (SSE427Q) /CSM/SS/SSE4-B/SSE427Q.Seq.d/                         44   0.005
SSB734 (SSB734Q) /CSM/SS/SSB7-B/SSB734Q.Seq.d/                         44   0.005
SLK507 (SLK507Q) /CSM/SL/SLK5-A/SLK507Q.Seq.d/                         40   0.076
SLA449 (SLA449Q) /CSM/SL/SLA4-C/SLA449Q.Seq.d/                         40   0.076
own update 2003. 7. 7
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC018930|AC018930.5 Homo sapiens clone RP11-114P4, WORKING DRAFT SEQUENCE, 31 unordered pieces.    42  0.007  2
AC013410|AC013410.5 Homo sapiens clone RP11-495I2, complete sequence.    42  0.008  2
BF030232|BF030232.1 601556894F1 NIH_MGC_58 Homo sapiens cDNA clone IMAGE:3826727 5', mRNA sequence.    32  0.029  4
CA855275|CA855275.1 PfESToac35a07.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    38  0.084  2
BM274605|BM274605.1 PfESToaa48a04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    38  0.087  2
AZ535544|AZ535544.1 ENTAC12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.094  3
CA854886|CA854886.1 PfESToac15d05.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    38  0.096  2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    34  0.46  8
AP002425|AP002425.1 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-886K22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46  1.0  1
AC128490|AC128490.3 Rattus norvegicus clone CH230-167C3, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  1.0  1
dna update 2003. 8.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54L40) RecName: Full=SUMO-activating enzyme subunit 2;        ...   166   2e-39
CP000584_250(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    43   0.023
CR954204_273(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    40   0.20
protein update 2009. 3.22
PSORT 

 psg: 0.70  gvh: 0.23  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial

>> prediction for VSG102 is nuc
5' end seq. ID VSG102F
5' end seq. 
>VSG102F.Seq
GTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGATCTATCAAAAGAAGAGATTGAA
CAACGTTCAAAAATCGAAAAGAAAACTTTAGCAACTCATCGTTTAACAAATGATACCTCA
CTTGTTGTAGAGGATTATAATCAAGATTTTCAAATAACAATCACTATTCAACATACTACA
GATTTCGATGAAGATACTAAAAAATTAAAAAAACAACAACAAAAAGAAAAAGATCAAAAA
GAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGATAAATTCTTTGAAATTATTGGT
AAAACTTCTCAAACAACAACAACAACAACAACCACAACAACAACTACAGAATCTGACAAT
AATAGTAATAATAATAAAAATAATAATAATAATAATGATGTTGAAGAGGATGATGGTTTT
ATGTTTATTGAAGACCAACCATCATCCACAACTACTTCATCTGCAACACCATCAATTAGT
AAGAAGAGAAAAGAAATTGATACAAATGAATCTGAAGATTTAGATTCCTCTAAAAAATTA
AAATCAAATTTACAAGACTAAAAAAAAATAATAAATTAAAATTTTAACTAAAAAAAAAA-
---------
Length of 5' end seq. 599
3' end seq. ID VSG102Z
3' end seq. 
>VSG102Z.Seq
----------CCANGCGTCCGGTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGAT
CTATCAAAAGAAGAGATTGATCAACGTTCAAAAATNGAAAAGAAAACTTTAGCAACTCAT
CGTTTAACAAATGATACCTCACTTGTTGTAGAGGATTATAATCAAGATTTTCAAATANCA
ATCACTATTCAACATACTNCAGATTTCGATGAAGATACTAAAAAATTNANAAAACAACAA
CAAAAAGAAAAAGATCAAAAAGAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGAT
AAATTCTTTGAAATTNTTGGTAAAACTTCTCAACCAACGACAGCNACANCAACCNCAACA
ACAACTACAGAATCTGNCAATAATAGTAATAATAATAAAAATAATAATAATAATAATGAT
GTTGAAGAGGATGATGGTTTTATGTTTATTGAAGACCANCCATCATCCACANCTACTTCA
TCTGCAACACCATCNATTAGTAAGAAGAGAAAAGAAATTGATACACAATGAATCTGAAGA
TTTAGATTCCTCTAAAAAATTAAAATCAAATTTACAAGACTAAAAAAA
Length of 3' end seq. 578
Connected seq. ID VSG102P
Connected seq. 
>VSG102P.Seq
GTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGATCTATCAAAAGAAGAGATTGAA
CAACGTTCAAAAATCGAAAAGAAAACTTTAGCAACTCATCGTTTAACAAATGATACCTCA
CTTGTTGTAGAGGATTATAATCAAGATTTTCAAATAACAATCACTATTCAACATACTACA
GATTTCGATGAAGATACTAAAAAATTAAAAAAACAACAACAAAAAGAAAAAGATCAAAAA
GAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGATAAATTCTTTGAAATTATTGGT
AAAACTTCTCAAACAACAACAACAACAACAACCACAACAACAACTACAGAATCTGACAAT
AATAGTAATAATAATAAAAATAATAATAATAATAATGATGTTGAAGAGGATGATGGTTTT
ATGTTTATTGAAGACCAACCATCATCCACAACTACTTCATCTGCAACACCATCAATTAGT
AAGAAGAGAAAAGAAATTGATACAAATGAATCTGAAGATTTAGATTCCTCTAAAAAATTA
AAATCAAATTTACAAGACTAAAAAAAAATAATAAATTAAAATTTTAACTAAAAAAAAAA-
---------CCANGCGTCCGGTTGGTAATGATATAATCTATGAAGGTGGTGATCAAGATC
TATCAAAAGAAGAGATTGATCAACGTTCAAAAATNGAAAAGAAAACTTTAGCAACTCATC
GTTTAACAAATGATACCTCACTTGTTGTAGAGGATTATAATCAAGATTTTCAAATANCAA
TCACTATTCAACATACTNCAGATTTCGATGAAGATACTAAAAAATTNANAAAACAACAAC
AAAAAGAAAAAGATCAAAAAGAAGGTAAAACTACTACAATTGAAAAAGAAGAAGATGATA
AATTCTTTGAAATTNTTGGTAAAACTTCTCAACCAACGACAGCNACANCAACCNCAACAA
CAACTACAGAATCTGNCAATAATAGTAATAATAATAAAAATAATAATAATAATAATGATG
TTGAAGAGGATGATGGTTTTATGTTTATTGAAGACCANCCATCATCCACANCTACTTCAT
CTGCAACACCATCNATTAGTAAGAAGAGAAAAGAAATTGATACACAATGAATCTGAAGAT
TTAGATTCCTCTAAAAAATTAAAATCAAATTTACAAGACTAAAAAAA
Length of connected seq. 1177
Full length Seq ID -
Full length Seq. -
Length of full length seq. -