VSF850
Library VS
(Link to library)
Clone ID VSF850
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14518-1
Original site URL
Representative seq. ID VSF850P
(Link to Original site)
Representative DNA sequence
>VSF850 (VSF850Q) /CSM/VS/VSF8-C/VSF850Q.Seq.d/
CAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTCTCCACAACAAAATA
ATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTTCAACTCTTCACCAC
AACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAATAATAGTAATAATA
GAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTTTGGAAATAAGAGCA
ACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAATAACAATTTTGGAA
ATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACAACAACAACAACAAC
AACAACAAAATAATAATCAATTCTGGTTTAACTAAGTTTATTCATTTATAGGTGAAAAAA
AAAAXXXXXXXXXXCAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTC
TCCACAACAAAATAATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTT
CAACTCTTCACCACAACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAA
TAATAGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTT
TGGAAATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAA
TAACAATTTTGGAAATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACA
ACAACAACAACAACAACAACAAAATAATAATCAATNCGGTTTAACTA
sequence update 2001. 3.22
Translated Amino Acid sequence
ktiqkppqqndffsspqqnnnnnnnnifgndpfnfnsspqqpqqppqqqqqqnnnnsnnr
nnnnsfdgfgdfsdfgnksnnsnnnsfgnnnnndnnnfgnnnnnnlfsppqqqqqqqqqq
qqnnnqfwfn*VYSFIGEKK---

---KTIQKPPQQNDFFSSPQQNNNNNNNNIFGNDPFNFNSSPQQPQQPPQQQQQQNNNNS
NNRNNNNSFDGFGDFSDFGNKSNNSNNNSFGNNNNNDNNNFGNNNNNNLFSPPQQQQQQQ
QQQQQNNNQXGLT


Translated Amino Acid sequence (All Frames)
Frame A:
qklfknhlnkmissllhnkiiiitiiiflemthlistlhhnnhnnhhnnnnnkiiiivii
eiiitalmvlvtlaileiratiatiivleiiiimiitileiiiittsfhhhnnnnnnnnn
nnkiiinsgltkfihl*vkkk---

---qklfknhlnkmissllhnkiiiitiiiflemthlistlhhnnhnnhhnnnnnkiiii
viieiiitalmvlvtlaileiratiatiivleiiiimiitileiiiittsfhhhnnnnnn
nnnnnkiiinxv*l

Frame B:
knyskttstk*fllfsttk****q**yfwk*pi*fqlfttttttttttttttk*******
k***ql*wfw*l*rfwk*eqq*qq**fwk*******qfwk****qplftttttttttttt
ttk**silv*lslfiyr*kkk---

---knyskttstk*fllfsttk****q**yfwk*pi*fqlfttttttttttttttk****
***k***ql*wfw*l*rfwk*eqq*qq**fwk*******qfwk****qplfttttttttt
tttttk**sxrfn

Frame C:
ktiqkppqqndffsspqqnnnnnnnnifgndpfnfnsspqqpqqppqqqqqqnnnnsnnr
nnnnsfdgfgdfsdfgnksnnsnnnsfgnnnnndnnnfgnnnnnnlfsppqqqqqqqqqq
qqnnnqfwfn*VYSFIGEKK---

---KTIQKPPQQNDFFSSPQQNNNNNNNNIFGNDPFNFNSSPQQPQQPPQQQQQQNNNNS
NNRNNNNSFDGFGDFSDFGNKSNNSNNNSFGNNNNNDNNNFGNNNNNNLFSPPQQQQQQQ
QQQQQNNNQXGLT

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF850 (VSF850Q) /CSM/VS/VSF8-C/VSF850Q.Seq.d/ 111 2e-23
VSF196 (VSF196Q) /CSM/VS/VSF1-D/VSF196Q.Seq.d/ 111 2e-23
SHG142 (SHG142Q) /CSM/SH/SHG1-B/SHG142Q.Seq.d/ 111 2e-23
SSM385 (SSM385Q) /CSM/SS/SSM3-D/SSM385Q.Seq.d/ 92 2e-17
SFF462 (SFF462Q) /CSM/SF/SFF4-C/SFF462Q.Seq.d/ 86 1e-15
AFN416 (AFN416Q) /CSM/AF/AFN4-A/AFN416Q.Seq.d/ 40 0.053
SFG593 (SFG593Q) /CSM/SF/SFG5-D/SFG593Q.Seq.d/ 38 0.21
VSD429 (VSD429Q) /CSM/VS/VSD4-B/VSD429Q.Seq.d/ 34 3.2
VHO216 (VHO216Q) /CSM/VH/VHO2-A/VHO216Q.Seq.d/ 34 3.2
VHH284 (VHH284Q) /CSM/VH/VHH2-D/VHH284Q.Seq.d/ 34 3.2

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC106332|AC106332.3 Rattus norvegicus clone CH230-231A15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 46 0.69 1
AC007670|AC007670.2 Homo sapiens clone RP11-14A7, WORKING DRAFT SEQUENCE, 11 unordered pieces. 44 2.0 2
AC098817|AC098817.3 Homo sapiens BAC clone RP11-92A1 from 2, complete sequence. 44 2.0 2
AC092456|AC092456.1 Homo sapiens chromosome CTD clone CTD-2155H16, WORKING DRAFT SEQUENCE, 23 unordered pieces. 44 2.7 1
AC087172|AC087172.1 Homo sapiens chromosome 8 clone RP11-697M17 map 8, LOW-PASS SEQUENCE SAMPLING. 44 2.7 1
BU570884|BU570884.1 AGENCOURT_10403633 NIH_MGC_82 Homo sapiens cDNA clone IMAGE:6622822 5', mRNA sequence. 44 2.7 1
AC022274|AC022274.5 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence. 44 2.7 1
AC034300|AC034300.2 Homo sapiens chromosome 2 clone RP11-468K23 map 2, WORKING DRAFT SEQUENCE, 30 unordered pieces. 44 2.7 1
AC037484|AC037484.3 Homo sapiens chromosome 8 clone RP11-97L13 map 8, WORKING DRAFT SEQUENCE, 6 unordered pieces. 44 2.7 1
AC090633|AC090633.1 Homo sapiens chromosome 15 clone RP11-252E12 map 15, LOW-PASS SEQUENCE SAMPLING. 36 3.5 2
dna update 2003. 8.24
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 302,015,747
protein update 2009. 3.22
PSORT

psg: 0.58 gvh: 0.26 alm: 0.75 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.12
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
16.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VSF850 is cyt

5' end seq. ID VSF850F
5' end seq.
>VSF850F.Seq
CAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTCTCCACAACAAAATA
ATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTTCAACTCTTCACCAC
AACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAATAATAGTAATAATA
GAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTTTGGAAATAAGAGCA
ACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAATAACAATTTTGGAA
ATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACAACAACAACAACAAC
AACAACAAAATAATAATCAATTCTGGTTTAACTAAGTTTATTCATTTATAGGTGAAAAAA
AAAA----------
Length of 5' end seq. 424
3' end seq. ID VSF850Z
3' end seq.
>VSF850Z.Seq
----------CAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTCTCCA
CAACAAAATAATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTTCAAC
TCTTCACCACAACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAATAAT
AGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTTTGGA
AATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAATAAC
AATTTTGGAAATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACAACAA
CAACAACAACAACAACAAAATAATAATCAATNCGGTTTAACTA
Length of 3' end seq. 393
Connected seq. ID VSF850P
Connected seq.
>VSF850P.Seq
CAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTCTCCACAACAAAATA
ATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTTCAACTCTTCACCAC
AACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAATAATAGTAATAATA
GAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTTTGGAAATAAGAGCA
ACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAATAACAATTTTGGAA
ATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACAACAACAACAACAAC
AACAACAAAATAATAATCAATTCTGGTTTAACTAAGTTTATTCATTTATAGGTGAAAAAA
AAAA----------CAAAAACTATTCAAAAACCACCTCAACAAAATGATTTCTTCTCTTC
TCCACAACAAAATAATAATAATAACAATAATAATATTTTTGGAAATGACCCATTTAATTT
CAACTCTTCACCACAACAACCACAACAACCACCACAACAACAACAACAACAAAATAATAA
TAATAGTAATAATAGAAATAATAATAACAGCTTTGATGGTTTTGGTGACTTTAGCGATTT
TGGAAATAAGAGCAACAATAGCAACAATAATAGTTTTGGAAATAATAATAATAATGATAA
TAACAATTTTGGAAATAATAATAATAACAACCTCTTTTCACCACCACAACAACAACAACA
ACAACAACAACAACAACAACAAAATAATAATCAATNCGGTTTAACTA
Length of connected seq. 817
Full length Seq ID -
Full length Seq. -
Length of full length seq. -