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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF826
Library VS
(Link to library)
Clone ID VSF826
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14471-1
Original site URL
Representative seq. ID VSF826E
(Link to Original site)
Representative DNA sequence 
>VSF826 (VSF826Q) /CSM/VS/VSF8-B/VSF826Q.Seq.d/
ATTTCTTTCAATTCTATGGTATGTTCCAAATTATATATTTTGCCATACAGTTATATCAAT
TTTAAGTGCCATTTTTTTTTATGGATTATGTTGTTTACCATTTTCAAATGCTGGTATTAT
AAAATCATCACCTGATGAAGATTTAAAAGATTTCATTTATAGAATTGAAAATAATCAACC
AATACCTGAAATTTGTCCAACTTGTNATATTCATAANCCATTAAGATCAAAACATTGTAA
ATTTTGTAAACAATGTGTTGCTAGATTCGATCCATCAATTGTATTTGGGATTAATAATTG
TGTTNGGTACTGCAAAATCAATAGATTATTTTTATTAGTTTTGTCATTGTATAGTGCAAT
AGCAATTCCAATTTATTATGTTGCTTTTAAATTTTTACAATTAGATTTAAATGCACCATC
ATTTGATGATGGATATAAACAAGCATTTGAATATTATTATGATACACATAGAATGGTTTC
AATATTTTTAGTTTATGGATTATTAGCATGGATTTGGATATTAAAGTTGTTGAGCGCTCA
AATTTTAGGTATCATTTTCAATTGTACATTAAATGAATTATTAAACTTGGCAAGATATTC
TTACCTAAGAAAAGATGGTAAATGGAATGTATTTCATCGTGGTTTCTTTTCAAATATTAC
AGAGTTCTTTATTGGTAGTAAAAAATGGTTTACATTTTTTAATTTTCCAATCGACTCAAA
CTTAATTAATAATAATAATAATAATAATATTAATAATATTAATATTAATAGTAACACTAT
AAATGTAAACACCAAAATCACTACAAATACTTCCAAAACTATTAAAGTTAATTAATTCTT
ATAAAATAAATAATAAAAACAAAAA
sequence update 2001. 3.25
Translated Amino Acid sequence 
FLSILWYVPNYIFCHTVISILSAIFFYGLCCLPFSNAGIIKSSPDEDLKDFIYRIENNQP
IPEICPTCXIHXPLRSKHCKFCKQCVARFDPSIVFGINNCVXYCKINRLFLLVLSLYSAI
AIPIYYVAFKFLQLDLNAPSFDDGYKQAFEYYYDTHRMVSIFLVYGLLAWIWILKLLSAQ
ILGIIFNCTLNELLNLARYSYLRKDGKWNVFHRGFFSNITEFFIGSKKWFTFFNFPIDSN
LINNNNNNNINNININSNTINVNTKITTNTSKTIKVN*fl*nk**kqk
Translated Amino Acid sequence (All Frames) 
Frame A:
isfnsmvcsklyilpysyinfkchfflwimlftifkcwyykiit**rfkrfhl*n*k*st
nt*nlsnlxys*xikiktl*il*tmcc*irsinciwd**lcxvlqnq*iifisfviv*cn
snsnllccf*iftirfkctii**wi*tsi*ill*yt*ngfnifslwiismdldikvvers
nfryhfqlyik*iiklgkiflpkkrw*mecisswflfkyyrvlyw**kmvyif*fsnrlk
ln*******y**y*y***hykckhqnhykyfqny*s*lilik*iiktk


Frame B:
FLSILWYVPNYIFCHTVISILSAIFFYGLCCLPFSNAGIIKSSPDEDLKDFIYRIENNQP
IPEICPTCXIHXPLRSKHCKFCKQCVARFDPSIVFGINNCVXYCKINRLFLLVLSLYSAI
AIPIYYVAFKFLQLDLNAPSFDDGYKQAFEYYYDTHRMVSIFLVYGLLAWIWILKLLSAQ
ILGIIFNCTLNELLNLARYSYLRKDGKWNVFHRGFFSNITEFFIGSKKWFTFFNFPIDSN
LINNNNNNNINNININSNTINVNTKITTNTSKTIKVN*fl*nk**kqk


Frame C:
ffqfygmfqiiyfaiqlyqf*vpfffmdyvvyhfqmlvl*nhhlmki*kisfielkiinq
ylkfvqlvifixh*dqnivnfvnnvlldsihqlylgliivxgtaksidyfy*fchcivq*
qfqfimlllnfyn*i*mhhhlmmdinkhlniimihiewfqyf*fmdy*hgfgy*sc*alk
f*vsfsivh*mny*twqdilt*ekmvngmyfivvsfqilqssllvvknglhflifqstqt
*liiiiiiiliililivtl*m*tpkslqilpkllklinsykinnknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF826 (VSF826Q) /CSM/VS/VSF8-B/VSF826Q.Seq.d/                       1358   0.0
CHQ855 (CHQ855Q) /CSM/CH/CHQ8-C/CHQ855Q.Seq.d/                       1142   0.0
VHP689 (VHP689Q) /CSM/VH/VHP6-D/VHP689Q.Seq.d/                        948   0.0
SSF430 (SSF430Q) /CSM/SS/SSF4-B/SSF430Q.Seq.d/                         40   0.055
SLB634 (SLB634Q) /CSM/SL/SLB6-B/SLB634Q.Seq.d/                         40   0.055
SHC481 (SHC481Q) /CSM/SH/SHC4-D/SHC481Q.Seq.d/                         40   0.055
SFK871 (SFK871Q) /CSM/SF/SFK8-C/SFK871Q.Seq.d/                         40   0.055
SFK209 (SFK209Q) /CSM/SF/SFK2-A/SFK209Q.Seq.d/                         40   0.055
SFJ746 (SFJ746Q) /CSM/SF/SFJ7-B/SFJ746Q.Seq.d/                         40   0.055
CFJ233 (CFJ233Q) /CSM/CF/CFJ2-B/CFJ233Q.Seq.d/                         40   0.055
own update 2003. 1. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   1e-07  22
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   2e-06  19
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    36   2e-06  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   2e-06  17
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   4e-06  19
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   1e-05  16
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38   2e-05  15
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   2e-05  26
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   2e-05  31
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    32   3e-05  14
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T2Q0) RecName: Full=Putative ZDHHC-type palmitoyltransferase ...   138   2e-31
(Q554E7) RecName: Full=Putative ZDHHC-type palmitoyltransferase ...   120   7e-26
AE014134_2246(AE014134|pid:none) Drosophila melanogaster chromos...    73   1e-11
AP008217_1081(AP008217|pid:none) Oryza sativa (japonica cultivar...    72   2e-11
AK046891_1(AK046891|pid:none) Mus musculus 10 days neonate cereb...    71   4e-11
(Q80TN5) RecName: Full=Palmitoyltransferase ZDHHC17;          EC...    71   4e-11
AB024494_1(AB024494|pid:none) Homo sapiens HIP3 mRNA for hunting...    71   5e-11
AB097013_1(AB097013|pid:none) Homo sapiens mRNA for putative NFk...    71   5e-11
AJ720763_1(AJ720763|pid:none) Gallus gallus mRNA for hypothetica...    69   2e-10
AC124214_10(AC124214|pid:none) Medicago truncatula clone mth2-36...    69   2e-10
protein update 2009. 3.22
PSORT 

 psg: 0.95  gvh: 0.75  alm: 0.24  top: 0.37  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VSF826 is end
5' end seq. ID VSF826F
5' end seq. 
>VSF826F.Seq
ATTTCTTTCAATTCTATGGTATGTTCCAAATTATATATTTTGCCATACAGTTATATCAAT
TTTAAGTGCCATTTTTTTTTATGGATTATGTTGTTTACCATTTTCAAATGCTGGTATTAT
AAAATCATCACCTGATGAAGATTTAAAAGATTTCATTTATAGAATTGAAAATAATCAACC
AATACCTGAAATTTGTCCAACTTGTGATATTCATAAACCATTAAGATCAAAACATTGTAA
ATTTTGTAAACAATGTGTTGCTAGATTCGATCATCATTGTATTTGGATTAATAATTGTGT
TGGTACTGCAAATCATAGATTATTTTTATTAGTTTTGTCATTGTATAGTGCAATAGCAAT
TCCAATTTATTATGTTGCTTTTAAATTTTTACAATTAGATTTAAATGCACCATCATTTGA
TGATGGATATAAACAAGCATTTGAA----------
Length of 5' end seq. 445
3' end seq. ID VSF826Z
3' end seq. 
>VSF826Z.Seq
----------GTTATATTCATAACCCATTAAGATCAAAACATTGTAAATTTTGTAAACAA
TGTGTTGCTAGATTCGATCCATCAATTGTATTTGGGATTAATAATTGTGTTNGGTACTGC
AAAATCAATAGATTATTTTTATTAGTTTTGTCATTGTATAGTGCAATAGCAATTCCAATT
TATTATGTTGCTTTTAAATTTTTACAATTAGATTTAAATGCACCATCATTTGATGATGGA
TATAAACAAGCATTTGAATATTATTATGATACACATAGAATGGTTTCAATATTTTTAGTT
TATGGATTATTAGCATGGATTTGGATATTAAAGTTGTTGAGCGCTCAAATTTTAGGTATC
ATTTTCAATTGTACATTAAATGAATTATTAAACTTGGCAAGATATTCTTACCTAAGAAAA
GATGGTAAATGGAATGTATTTCATCGTGGTTTCTTTTCAAATATTACAGAGTTCTTTATT
GGTAGTAAAAAATGGTTTACATTTTTTAATTTTCCAATCGACTCAAACTTAATTAATAAT
AATAATAATAATAATATTAATAATATTAATATTAATAGTAACACTATAAATGTAAACACC
AAAATCACTACAAATACTTCCAAAACTATTAAAGTTAATTAATTCTTATAAAATAAATAA
TAAAAACAAAAA
Length of 3' end seq. 662
Connected seq. ID VSF826P
Connected seq. 
>VSF826P.Seq
ATTTCTTTCAATTCTATGGTATGTTCCAAATTATATATTTTGCCATACAGTTATATCAAT
TTTAAGTGCCATTTTTTTTTATGGATTATGTTGTTTACCATTTTCAAATGCTGGTATTAT
AAAATCATCACCTGATGAAGATTTAAAAGATTTCATTTATAGAATTGAAAATAATCAACC
AATACCTGAAATTTGTCCAACTTGTGATATTCATAAACCATTAAGATCAAAACATTGTAA
ATTTTGTAAACAATGTGTTGCTAGATTCGATCATCATTGTATTTGGATTAATAATTGTGT
TGGTACTGCAAATCATAGATTATTTTTATTAGTTTTGTCATTGTATAGTGCAATAGCAAT
TCCAATTTATTATGTTGCTTTTAAATTTTTACAATTAGATTTAAATGCACCATCATTTGA
TGATGGATATAAACAAGCATTTGAA----------GTTATATTCATAACCCATTAAGATC
AAAACATTGTAAATTTTGTAAACAATGTGTTGCTAGATTCGATCCATCAATTGTATTTGG
GATTAATAATTGTGTTNGGTACTGCAAAATCAATAGATTATTTTTATTAGTTTTGTCATT
GTATAGTGCAATAGCAATTCCAATTTATTATGTTGCTTTTAAATTTTTACAATTAGATTT
AAATGCACCATCATTTGATGATGGATATAAACAAGCATTTGAATATTATTATGATACACA
TAGAATGGTTTCAATATTTTTAGTTTATGGATTATTAGCATGGATTTGGATATTAAAGTT
GTTGAGCGCTCAAATTTTAGGTATCATTTTCAATTGTACATTAAATGAATTATTAAACTT
GGCAAGATATTCTTACCTAAGAAAAGATGGTAAATGGAATGTATTTCATCGTGGTTTCTT
TTCAAATATTACAGAGTTCTTTATTGGTAGTAAAAAATGGTTTACATTTTTTAATTTTCC
AATCGACTCAAACTTAATTAATAATAATAATAATAATAATATTAATAATATTAATATTAA
TAGTAACACTATAAATGTAAACACCAAAATCACTACAAATACTTCCAAAACTATTAAAGT
TAATTAATTCTTATAAAATAAATAATAAAAACAAAAA
Length of connected seq. 1107
Full length Seq ID VSF826E
Full length Seq. 
>VSF826E.Seq
ATTTCTTTCAATTCTATGGTATGTTCCAAATTATATATTTTGCCATACAGTTATATCAAT
TTTAAGTGCCATTTTTTTTTATGGATTATGTTGTTTACCATTTTCAAATGCTGGTATTAT
AAAATCATCACCTGATGAAGATTTAAAAGATTTCATTTATAGAATTGAAAATAATCAACC
AATACCTGAAATTTGTCCAACTTGTNATATTCATAANCCATTAAGATCAAAACATTGTAA
ATTTTGTAAACAATGTGTTGCTAGATTCGATCCATCAATTGTATTTGGGATTAATAATTG
TGTTNGGTACTGCAAAATCAATAGATTATTTTTATTAGTTTTGTCATTGTATAGTGCAAT
AGCAATTCCAATTTATTATGTTGCTTTTAAATTTTTACAATTAGATTTAAATGCACCATC
ATTTGATGATGGATATAAACAAGCATTTGAATATTATTATGATACACATAGAATGGTTTC
AATATTTTTAGTTTATGGATTATTAGCATGGATTTGGATATTAAAGTTGTTGAGCGCTCA
AATTTTAGGTATCATTTTCAATTGTACATTAAATGAATTATTAAACTTGGCAAGATATTC
TTACCTAAGAAAAGATGGTAAATGGAATGTATTTCATCGTGGTTTCTTTTCAAATATTAC
AGAGTTCTTTATTGGTAGTAAAAAATGGTTTACATTTTTTAATTTTCCAATCGACTCAAA
CTTAATTAATAATAATAATAATAATAATATTAATAATATTAATATTAATAGTAACACTAT
AAATGTAAACACCAAAATCACTACAAATACTTCCAAAACTATTAAAGTTAATTAATTCTT
ATAAAATAAATAATAAAAACAAAAA
Length of full length seq. 865