>VSF756 (VSF756Q) /CSM/VS/VSF7-C/VSF756Q.Seq.d/
GGCATCTTGTTTATTAGAAACTGCTATTCAATCTTCATTATGTAAAGATAATGTAACAGT
AATAATTGTAAAGTTATAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATTNNTTTT
NAAAAAAAAAAAAAANTTTAAAAANNAAAXXXXXXXXXXGGCATCTTGTTTATTAGAAAC
TGCTA

hlvy*kllfnlhyvkim*q**l*SYKKKKKKLKKKKNXFXKKKKXLKXK---

---GILFIRNC

Frame A:
gilfirncysifim*r*cnsnnckvikkkkkn*kkkkixfxkkkkx*kx---

---GILFIRNC

Frame B:
asclletaiqsslckdnvtviivkl*kkkkkikkkkkxxxkkkkxfkxx---

---asclleta

Frame C:
hlvy*kllfnlhyvkim*q**l*SYKKKKKKLKKKKNXFXKKKKXLKXK---

---hlvy*kll

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF756 (VSF756Q) /CSM/VS/VSF7-C/VSF756Q.Seq.d/                        153   1e-36
SSK540 (SSK540Q) /CSM/SS/SSK5-B/SSK540Q.Seq.d/                        153   1e-36
SHL422 (SHL422Q) /CSM/SH/SHL4-A/SHL422Q.Seq.d/                        100   1e-20
CHF241 (CHF241Q) /CSM/CH/CHF2-B/CHF241Q.Seq.d/                         84   8e-16
SSG334 (SSG334Q) /CSM/SS/SSG3-B/SSG334Q.Seq.d/                         34   0.67
SHE566 (SHE566Q) /CSM/SH/SHE5-C/SHE566Q.Seq.d/                         34   0.67
SHB347 (SHB347Q) /CSM/SH/SHB3-B/SHB347Q.Seq.d/                         34   0.67
CHO826 (CHO826Q) /CSM/CH/CHO8-B/CHO826Q.Seq.d/                         34   0.67
CHG696 (CHG696Q) /CSM/CH/CHG6-D/CHG696Q.Seq.d/                         34   0.67
VSE780 (VSE780Q) /CSM/VS/VSE7-D/VSE780Q.Seq.d/                         32   2.7

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH922226|BH922226.1 odh01e04.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  0.52  2
BH347681|BH347681.1 CH230-65A19.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-65A19, DNA sequence.    44  0.56  1
CC283745|CC283745.1 CH261-99H1_Sp6.2 CH261 Gallus gallus genomic clone CH261-99H1, DNA sequence.    42  2.2  1
BH504922|BH504922.1 BOGMX49TR BOGM Brassica oleracea genomic clone BOGMX49, DNA sequence.    30  2.9  2
BH931930|BH931930.1 odj16e03.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    30  6.2  2
BH972555|BH972555.1 odg19f06.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    30  7.2  2
AL700801|AL700801.1 Homo sapiens mRNA; EST DKFZp686H0111_r1  (from clone DKFZp686H0111).    40  8.7  1
AL699944|AL699944.1 Homo sapiens mRNA; EST DKFZp686H01116_r1  (from clone  DKFZp686H01116).    40  8.7  1
AC015881|AC015881.3 Homo sapiens chromosome 9 clone RP11-529D20 map 9, WORKING DRAFT SEQUENCE, 24 unordered pieces.    40  8.7  1
BU418845|BU418845.1 603961270F1 CSEQRBN09 Gallus gallus cDNA clone ChEST936l17 5', mRNA sequence.    40  8.7  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3019103
Number of Hits to DB: 119,100,810

 psg: 0.38  gvh: 0.01  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.99  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VSF756 is nuc

>VSF756F.Seq
GGCATCTTGTTTATTAGAAACTGCTATTCAATCTTCATTATGTAAAGATAATGTAACAGT
AATAATTGTAAAGTTATAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATTNNTTTT
NAAAAAAAAAAAAAANTTTAAAAANNAAA----------

>VSF756Z.Seq
----------GGCATCTTGTTTATTAGAAACTGCTA

>VSF756P.Seq
GGCATCTTGTTTATTAGAAACTGCTATTCAATCTTCATTATGTAAAGATAATGTAACAGT
AATAATTGTAAAGTTATAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAATTNNTTTT
NAAAAAAAAAAAAAANTTTAAAAANNAAA----------GGCATCTTGTTTATTAGAAAC
TGCTA