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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF607
Library VS
(Link to library)
Clone ID VSF607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID VSF607E
(Link to Original site)
Representative DNA sequence 
>VSF607 (VSF607Q) /CSM/VS/VSF6-A/VSF607Q.Seq.d/
GAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAA
CGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCAT
CCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGT
CAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATT
ATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTNTGATTTA
ACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAAGTTGATGTTAAAGA
TCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGANACAATTTATCATACTATGA
TGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTNGTCTGGTTAACATCAAAACN
CCNCGGNAACAAGGCTGNCACNCTCGTTCAACAACCAACCTTAAAATTACCANAAACCGN
TCNCGATTCCAACTTAATGAGNTTANATGAAAAANAAGTCGCTGANGCTGCTGCCCNCCC
ATTACCANAAGACAATGATGACNTGNAAACAAATTTAAAAAAAAAAAACAATAAAAAAAA
ATAATAATAATAATAAAAAGCCAACAATAAATT
sequence update 2001. 3.25
Translated Amino Acid sequence 
nkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkstsmygiplv
kknsvv*emviifkvivpllclmshpvfhtkmfqigtxi*PEFVKTSQSFYVVTKVDVKD
RKVKPSQIVFHRRXNLSYYDVSAKSNYNFEKPXVWLTSKXXGNKAXTLVQQPTLKLPXTX
XDSNLMXLXEKXVAXAAAXPLPXDNDDXXTNLKKKNNKKK*****kannk
Translated Amino Acid sequence (All Frames) 
Frame A:
eqiklvlvgdggvgkttfvqrhltgefepryiptlgvsvhplifytnfgkihfnvwdtag
qekfgglrdgyyiqgncaiimfdvtsrisyknvpnwhxdltrvcenipivlcgnks*c*r
s*sqtipncfps*xqfiil*cfsqiklqfrktixlvniktprxqgxhxrsttnlkitxnr
srfqlnexx*kxsr*xccppitxrq**xxnkfkkkkq*kkiiiiiksqq*i


Frame B:
nkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkstsmygiplv
kknsvv*emviifkvivpllclmshpvfhtkmfqigtxi*PEFVKTSQSFYVVTKVDVKD
RKVKPSQIVFHRRXNLSYYDVSAKSNYNFEKPXVWLTSKXXGNKAXTLVQQPTLKLPXTX
XDSNLMXLXEKXVAXAAAXPLPXDNDDXXTNLKKKNNKKK*****kannk


Frame C:
tn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*nplqcmgyrws
rkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw*qklmlki
vksnhpklfsivxtiyhtmmfqpnqitisknhxsg*hqnxxxtrlxxsfnnqp*nyxkpx
xipt**xxmkxkslxllpxhyxktmmtxkqi*kkktikknnnnnkkptin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF607 (VSF607Q) /CSM/VS/VSF6-A/VSF607Q.Seq.d/                       1148   0.0
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/                       1132   0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/                       1132   0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/                       1118   0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/                       1118   0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/                       1102   0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/                       1102   0.0
VSI638 (VSI638Q) /CSM/VS/VSI6-B/VSI638Q.Seq.d/                       1084   0.0
VSG164 (VSG164Q) /CSM/VS/VSG1-C/VSG164Q.Seq.d/                       1072   0.0
VSG244 (VSG244Q) /CSM/VS/VSG2-B/VSG244Q.Seq.d/                       1019   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds.   678   0.0    2
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728.          92   3e-51  5
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds.    92   1e-48  4
CA758831|AAF60289.1, mRNA sequence.    74   1e-45  5
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
BI815073|BI815073.1 PfESToaa14a04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92   1e-37  5
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   221   1e-89
(P32836) RecName: Full=GTP-binding nuclear protein GSP2/CNR2;  &...   187   5e-63
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ...   188   7e-63
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam...   189   9e-63
(Q74ZA9) RecName: Full=GTP-binding nuclear protein GSP1/Ran;  &A...   186   9e-63
CR382121_184(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   186   9e-63
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   186   9e-63
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7...   186   9e-63
JC1455(JC1455;S20712)GTP-binding protein Ran/TC4 - dog                190   1e-62
CU633438_787(CU633438|pid:none) Podospora anserina genomic DNA c...   186   3e-62
protein update 2009. 3.22
PSORT 

 psg: 0.82  gvh: 0.21  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vacuolar

>> prediction for VSF607 is cyt
5' end seq. ID VSF607F
5' end seq. 
>VSF607F.Seq
GAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAA
CGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCAT
CCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGT
CAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATT
ATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTCTGATTTA
ACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAAGTTGATGTTAAAGA
TCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCATACTATGA
TGTTTCAG----------
Length of 5' end seq. 428
3' end seq. ID VSF607Z
3' end seq. 
>VSF607Z.Seq
----------CAAAAATGTTNCAAATTGGCACTTTGATTTAACCANAGTTTGTGAAAACA
TCCCAATCGTTTTATGTGGNAACAAAGTTGATGTTAAANATNGTAAAGTCAAACCATCCC
AAATTGTTTTCCATCGNANAAACAATTTATCANACTATGATGTTTCAGCCAAATCAAATT
ACAATTTCGAAAAACCATTNGTCTGGTTAACATCAAAACNCCNCGGNAACAAGGCTGNCA
CNCTCGTTCAACAACCAACCTTAAAATTACCANAAACCGNTCNCGATTCCAACTTAATGA
GNTTANATGAAAAANAAGTCGCTGANGCTGCTGCCCNCCCATTACCANAAGACAATGATG
ACNTGNAAACAAATTTAAAAAAAAAAAACAATAAAAAAAAATAATAATAATAATAAAAAG
CCAACAATAAATT
Length of 3' end seq. 423
Connected seq. ID VSF607P
Connected seq. 
>VSF607P.Seq
GAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAA
CGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCAT
CCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGT
CAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATT
ATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTCTGATTTA
ACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAAGTTGATGTTAAAGA
TCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGATACAATTTATCATACTATGA
TGTTTCAG----------CAAAAATGTTNCAAATTGGCACTTTGATTTAACCANAGTTTG
TGAAAACATCCCAATCGTTTTATGTGGNAACAAAGTTGATGTTAAANATNGTAAAGTCAA
ACCATCCCAAATTGTTTTCCATCGNANAAACAATTTATCANACTATGATGTTTCAGCCAA
ATCAAATTACAATTTCGAAAAACCATTNGTCTGGTTAACATCAAAACNCCNCGGNAACAA
GGCTGNCACNCTCGTTCAACAACCAACCTTAAAATTACCANAAACCGNTCNCGATTCCAA
CTTAATGAGNTTANATGAAAAANAAGTCGCTGANGCTGCTGCCCNCCCATTACCANAAGA
CAATGATGACNTGNAAACAAATTTAAAAAAAAAAAACAATAAAAAAAAATAATAATAATA
ATAAAAAGCCAACAATAAATT
Length of connected seq. 851
Full length Seq ID VSF607E
Full length Seq. 
>VSF607E.Seq
GAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGTGTTGGTAAAACCACTTTTGTCCAA
CGTCATCTTACTGGTGAATTCGAACCAAGATATATCCCAACTCTTGGTGTATCAGTCCAT
CCATTAATCTTCTACACCAATTTCGGTAAAATCCACTTCAATGTATGGGATACCGCTGGT
CAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTATATTCAAGGTAATTGTGCCATTATT
ATGTTTGATGTCACATCCCGTATTTCATACAAAAATGTTCCAAATTGGCACTNTGATTTA
ACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGTGGTAACAAAAGTTGATGTTAAAGA
TCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGTAGANACAATTTATCATACTATGA
TGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCATTNGTCTGGTTAACATCAAAACN
CCNCGGNAACAAGGCTGNCACNCTCGTTCAACAACCAACCTTAAAATTACCANAAACCGN
TCNCGATTCCAACTTAATGAGNTTANATGAAAAANAAGTCGCTGANGCTGCTGCCCNCCC
ATTACCANAAGACAATGATGACNTGNAAACAAATTTAAAAAAAAAAAACAATAAAAAAAA
ATAATAATAATAATAAAAAGCCAACAATAAATT
Length of full length seq. 693