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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF567
Library VS
(Link to library)
Clone ID VSF567
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15612-1
Original site URL
Representative seq. ID VSF567P
(Link to Original site)
Representative DNA sequence 
>VSF567 (VSF567Q) /CSM/VS/VSF5-C/VSF567Q.Seq.d/
ATCTCTGAAGCCGTCACCAGAGNAATACACCATCAATCTCCACAAGAGACTCTACGGAAC
TACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGAT
CATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGG
TATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGA
AAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGG
TCTCCAAACCAAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATA
TATTTTAAAAAAAAAAAAAAAAAAAAAANCCCCNAAAAAAAAAXXXXXXXXXXATCATCT
GAAGCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAACTACCTTC
AAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGT
ACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAG
AACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCA
ACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAA
ACCAAAAAAGTTGCTGACAACTAAANGTTTAATTAAAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
iseavtrxihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepr
yqerstqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLI
YFKKKKKKKXPXKK---

---SSEAVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLW
SQGIKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*xfn*n
Translated Amino Acid sequence (All Frames) 
Frame A:
iseavtrxihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepr
yqerstqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLI
YFKKKKKKKXPXKK---

---ii*srhqrihhqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilm
epryqerstqspchplkkekrr*krn*kiihccfishrqelqrspnqksc*qlxv*lk*

Frame B:
slkpspexytinlhkrlygttfkdrapkavkqvklfaqkimgtkdvridnklnkflwsqg
iknvphrvrvtlsrkrnedenateklytvaslvivksfkglqtkkvadn*mv*lk*if*y
ilkkkkkkkxpkkk---

---SSEAVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLW
SQGIKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*xfn*n

Frame C:
l*srhqxntpsistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsygakv
srtfhtesvspsqeretkmktqlknytlllh*sssraskvskpkkllttkwfn*nkffni
f*kkkkkkxpxkk---

---hlkpspentpsistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsyg
akvsrtfhtesvspsqeretkmktqlknytlllh*sssraskvskpkkllttkxliki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF567 (VSF567Q) /CSM/VS/VSF5-C/VSF567Q.Seq.d/                        720   0.0
VSJ839 (VSJ839Q) /CSM/VS/VSJ8-B/VSJ839Q.Seq.d/                        704   0.0
VSI719 (VSI719Q) /CSM/VS/VSI7-A/VSI719Q.Seq.d/                        704   0.0
VSG709 (VSG709Q) /CSM/VS/VSG7-A/VSG709Q.Seq.d/                        704   0.0
VSG684 (VSG684Q) /CSM/VS/VSG6-D/VSG684Q.Seq.d/                        704   0.0
VSG576 (VSG576Q) /CSM/VS/VSG5-D/VSG576Q.Seq.d/                        704   0.0
VSG544 (VSG544Q) /CSM/VS/VSG5-B/VSG544Q.Seq.d/                        704   0.0
VSG250 (VSG250Q) /CSM/VS/VSG2-C/VSG250Q.Seq.d/                        704   0.0
VSF671 (VSF671Q) /CSM/VS/VSF6-C/VSF671Q.Seq.d/                        704   0.0
VSF237 (VSF237Q) /CSM/VS/VSF2-B/VSF237Q.Seq.d/                        704   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB084704|CB084704.1 hq20f02.b1 Hedyotis centranthoides flower -Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq20f02, mRNA sequence.    58  2e-04  1
BJ175497|BJ175497.1 Physcomitrella patens subsp. patens cDNA clone:pphb14p23, 5' end, single read.    58  2e-04  1
AW156111|AW156111.1 ga23g11.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU031221 5' similar to SW:RL31_PICMA O65071 60S RIBOSOMAL PROTEIN L31. ;, mRNA sequence.    58  2e-04  1
BZ293265|BZ293265.1 CG0237.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0237, DNA sequence.    46  2e-04  3
BZ294292|BZ294292.1 CG0814.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0814, DNA sequence.    46  2e-04  3
BZ295534|BZ295534.1 CG1537.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG1537, DNA sequence.    46  3e-04  3
BG543772|BG543772.1 E1465 Chinese cabbage etiolated seedling library Brassica rapa subsp. pekinensis cDNA clone E1465, mRNA sequence.    40  0.009  2
BU047638|BU047638.1 PP_LEa0030I23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0030I23f, mRNA sequence.    52  0.010  1
BU574126|BU574126.1 PA__Ea0006F03f Almond developing seed Prunus dulcis cDNA clone PA__Ea0006F03f, mRNA sequence.    52  0.010  1
BU044788|BU044788.1 PP_LEa0020I02f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0020I02f, mRNA sequence.    52  0.010  1
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XB5) RecName: Full=60S ribosomal protein L31;                     216   8e-55
EF062489_1(EF062489|pid:none) Artemia franciscana clone 1JM23.05...   144   3e-33
(Q7KF90) RecName: Full=60S ribosomal protein L31;  &(Q9GP16) Rec...   143   6e-33
DQ213101_1(DQ213101|pid:none) Taeniopygia guttata clone 0058P001...   142   1e-32
BT046479_1(BT046479|pid:none) Salmo salar clone ssal-evd-510-200...   141   2e-32
(Q90YT7) RecName: Full=60S ribosomal protein L31;  &AF401586_1(A...   141   2e-32
BT058251_1(BT058251|pid:none) Salmo salar clone Contig2813 60S r...   140   4e-32
EU139229_1(EU139229|pid:none) Flustra foliacea putative 60S ribo...   140   4e-32
DQ892609_1(DQ892609|pid:none) Synthetic construct clone IMAGE:10...   140   5e-32
X69181_1(X69181|pid:none) H.sapiens mRNA for ribosomal protein L...   140   5e-32
protein update 2009. 3.22
PSORT 

 psg: 0.78  gvh: 0.14  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.28  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSF567 is nuc
5' end seq. ID VSF567F
5' end seq. 
>VSF567F.Seq
ATCTCTGAAGCCGTCACCAGAGNAATACACCATCAATCTCCACAAGAGACTCTACGGAAC
TACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGAT
CATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGG
TATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGA
AAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGG
TCTCCAAACCAAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATA
TATTTTAAAAAAAAAAAAAAAAAAAAAANCCCCNAAAAAAAAA----------
Length of 5' end seq. 403
3' end seq. ID VSF567Z
3' end seq. 
>VSF567Z.Seq
----------ATCATCTGAAGCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGAC
TCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTG
CTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTAT
GGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAA
ACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGA
GCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTAAANGTTTAATTAAAATAA
Length of 3' end seq. 348
Connected seq. ID VSF567P
Connected seq. 
>VSF567P.Seq
ATCTCTGAAGCCGTCACCAGAGNAATACACCATCAATCTCCACAAGAGACTCTACGGAAC
TACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGAT
CATGGGTACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGG
TATCAAGAACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGA
AAACGCAACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGG
TCTCCAAACCAAAAAAGTTGCTGACAACTAAATGGTTTAATTAAAATAAATTTTTTAATA
TATTTTAAAAAAAAAAAAAAAAAAAAAANCCCCNAAAAAAAAA----------ATCATCT
GAAGCCGTCACCAGAGAATACACCATCAATCTCCACAAGAGACTCTACGGAACTACCTTC
AAGGATAGAGCCCCAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGT
ACCAAAGATGTCCGTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAG
AACGTTCCACACAGAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCA
ACTGAAAAATTATACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAA
ACCAAAAAAGTTGCTGACAACTAAANGTTTAATTAAAATAA
Length of connected seq. 751
Full length Seq ID -
Full length Seq. -
Length of full length seq. -