>AHA486 (AHA486Q) /CSM/AH/AHA4-D/AHA486Q.Seq.d/
XXXXXXXXXXCAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGTGGGTGGTGTTAGT
TTATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGTTTCTCTTTCATGT
GATTTACAATGTAATTTATCTCCAAATGAAACATTTTATTTAAGTAATCCAATACTAAGT
TCANATGACAAAGATATAACAAATAGTANTGATTGTNNATCATGTCATTCNATGAATNCA
GACTGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCCAACATCATATCA
TTATGATGTTANAATNGAAGAAATTCAATCATCATTAAATCCATCATCATCAAATGGTGG
TGAAAGANAATCATCAAANCTATCAGGTGGNGCNATNGNTGGTATNACAATTGGTTGTGT
TG

---VKNKKDGISIRVGGVSLSGIINASLGISSENVSLSCDLQCNLSPNETFYLSNPILSS
XDKDITNSXDCXSCHSMNXDCC**nirsiispirpniisl*cxnxrnsiiiksiiikww*
kxiikxirwxxxwyxnwlc

Frame A:
---s*k*krwyfnksgwc*firyykckfrnfirkcfsfm*ftm*fisk*nilfk*sntkf
x*qrynk*x*lximsfxexrlllmkhqeyyisn*aqhhiimmlxxkkfnhh*ihhhqmvv
kxnhqxyqvxxxxvxqlvvl


Frame B:
---VKNKKDGISIRVGGVSLSGIINASLGISSENVSLSCDLQCNLSPNETFYLSNPILSS
XDKDITNSXDCXSCHSMNXDCC**nirsiispirpniisl*cxnxrnsiiiksiiikww*
kxiikxirwxxxwyxnwlc


Frame C:
---lkikkmvfq*ewvvlvyqvl*mqv*efhqkmflfhviynviylqmkhfi*viqy*vx
mtki*qivxivxhvix*xqtvvdetsgvlylqlgptsyhydvxxeeiqsslnpsssngge
rxssxlsggaxxgxtigcv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHA486 (AHA486Q) /CSM/AH/AHA4-D/AHA486Q.Seq.d/                        694   0.0
SSI271 (SSI271Q) /CSM/SS/SSI2-C/SSI271Q.Seq.d/                        654   0.0
SHL850 (SHL850Q) /CSM/SH/SHL8-C/SHL850Q.Seq.d/                        654   0.0
SHL846 (SHL846Q) /CSM/SH/SHL8-B/SHL846Q.Seq.d/                        654   0.0
SHL682 (SHL682Q) /CSM/SH/SHL6-D/SHL682Q.Seq.d/                        654   0.0
SHJ839 (SHJ839Q) /CSM/SH/SHJ8-B/SHJ839Q.Seq.d/                        654   0.0
SHJ782 (SHJ782Q) /CSM/SH/SHJ7-D/SHJ782Q.Seq.d/                        654   0.0
SHJ515 (SHJ515Q) /CSM/SH/SHJ5-A/SHJ515Q.Seq.d/                        654   0.0
SHG880 (SHG880Q) /CSM/SH/SHG8-D/SHG880Q.Seq.d/                        654   0.0
SHG359 (SHG359Q) /CSM/SH/SHG3-C/SHG359Q.Seq.d/                        654   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.   371   0.0    2
U09478|U09478.1 Dictyostelium discoideum KAx-3 LagC protein (lagC) mRNA, complete cds.    72   3e-17  2
AF258615|AF258615.1 Dictyostelium discoideum LagC protein (lagC) gene, complete cds.    72   4e-17  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50   1e-15  6
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    50   3e-07  4
AF482962|AF482962.1 Dictyostelium discoideum ABC transporter AbcH.3 (abcH.3) gene, complete cds.    50   1e-06  2
AF288992|AF288992.1 Homo sapiens 15 kDa selenoprotein (SEP15) gene, complete cds.    48   0.094  1
AL121989|AL121989.12 Human DNA sequence from clone RP4-604K5 on chromosome 1p22.2-31.1.  Contains a gene for a 15 kDa selenoprotein and a part of the heparan sulfate 2-sulfotransferase gene (KIAA0448). Contains ESTs, STSs,  GSSs and CpG islands.    48   0.094  1
AC104712|AC104712.1 Oryza sativa chromosome 5 clone OJ1333C12, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.    46   0.37   1
AC104069|AC104069.3 Homo sapiens BAC clone RP11-279B11 from 2, complete sequence.    34   0.75   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...   142   1e-48
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS...   142   1e-48
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS...   142   1e-48
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS...   142   1e-48
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...   142   1e-48
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS...   142   2e-46
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS...   142   2e-46
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS...   142   2e-46
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS...   142   2e-46
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS...   142   2e-46

 psg: 0.91  gvh: 0.53  alm: 0.39  top: 0.40  tms: 0.00  mit: 0.19  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for AHA486 is cyt

>AHA486Z.Seq
NNNNNNNNNNCAGTTAAAAATAAAAAAGATGGTATTTCAATAAGAGTGGGTGGTGTTAGT
TTATCAGGTATTATAAATGCAAGTTTAGGAATTTCATCAGAAAATGTTTCTCTTTCATGT
GATTTACAATGTAATTTATCTCCAAATGAAACATTTTATTTAAGTAATCCAATACTAAGT
TCANATGACAAAGATATAACAAATAGTANTGATTGTNNATCATGTCATTCNATGAATNCA
GACTGTTGTTGATGAAACATCAGGAGTATTATATCTCCAATTAGGCCCAACATCATATCA
TTATGATGTTANAATNGAAGAAATTCAATCATCATTAAATCCATCATCATCAAATGGTGG
TGAAAGANAATCATCAAANCTATCAGGTGGNGCNATNGNTGGTATNACAATTGGTTGTGT
TG