VSF490
Library VS
(Link to library)
Clone ID VSF490
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10099-1
Original site URL
Representative seq. ID VSF490E
(Link to Original site)
Representative DNA sequence
>VSF490 (VSF490Q) /CSM/VS/VSF4-D/VSF490Q.Seq.d/
ATTTTAGGTTTATTATTATTTGTTGTTGCTTCAGCCACTGCAAAATATACCTGTGAATGT
AATTTCTCACATGGTGAAACTCGTTTAATTGCTGTAAAAGATAAATCTCATTGTATGGAA
AGATGTAATTCCATTATTCAAGAAGTTTATACTATTCCATGTGATTTACAAACTTGCACT
TGTAAATGTACAAATGGAACTATTTTCGGTTGTCAACCAACTCCAACAACAACATCAACT
ACCTCAGCTTCAACAACAACTGGTAAAGCCTCATCATCTGGTCCATCAACAACCGGTAGA
GCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCAGGTCCATCAACAACT
GGTAGAGCTTCATCATCTGGTCCATCATCAACTGGTAAAGCTTCATCTTCAGGTCCATCA
TCAACTGGTAAAGCTTCATCATCTGGTCCATCATCAACTGGTAAAACTTCATCTTCAAGC
ACCCAAACTTCAGGTTCCCAAACCTCAGGTTCACAAACATCAGGTTCACAAACATCGGGT
TCACAATCAGGACAACAAACAGGTTCGCAATCAGGTTCACAATCAGGACAACAAACAAGT
TCACAATCAGGTTCACAATCAGGACAACAATCAGGTTCACAATCAGGTACCCAAACCTCA
GGTCAAACCTCAGGTCAAACTGGTGCCCAAACTGGTCAATCAACTGCTTCAAGTGGTAGC
AGTGGAAGTAGTGGAAGCAGTGGAAGTAGTGGAAGTAGCGGTGGTAGTTCTGGAAGTGGT
GGCAGTTCTGGAAGTGGTGGTGGTAGCGGTTCAGGTAGTGGCATGGCAGTTAAAGTTGAT
AAATGCTATGGTACTTACTGTCCATGTAACAAAGAACTTTAAGTGTTAGAGTATAAATAA
ATTAAATTATCGATTAA
sequence update 2001. 3.25
Translated Amino Acid sequence
ILGLLLFVVASATAKYTCECNFSHGETRLIAVKDKSHCMERCNSIIQEVYTIPCDLQTCT
CKCTNGTIFGCQPTPTTTSTTSASTTTGKASSSGPSTTGRASSSGPSTTGRASSSGPSTT
GRASSSGPSSTGKASSSGPSSTGKASSSGPSSTGKTSSSSTQTSGSQTSGSQTSGSQTSG
SQSGQQTGSQSGSQSGQQTSSQSGSQSGQQSGSQSGTQTSGQTSGQTGAQTGQSTASSGS
SGSSGSSGSSGSSGGSSGSGGSSGSGGGSGSGSGMAVKVDKCYGTYCPCNKEL*vleyk*
iklsi


Translated Amino Acid sequence (All Frames)
Frame A:
ILGLLLFVVASATAKYTCECNFSHGETRLIAVKDKSHCMERCNSIIQEVYTIPCDLQTCT
CKCTNGTIFGCQPTPTTTSTTSASTTTGKASSSGPSTTGRASSSGPSTTGRASSSGPSTT
GRASSSGPSSTGKASSSGPSSTGKASSSGPSSTGKTSSSSTQTSGSQTSGSQTSGSQTSG
SQSGQQTGSQSGSQSGQQTSSQSGSQSGQQSGSQSGTQTSGQTSGQTGAQTGQSTASSGS
SGSSGSSGSSGSSGGSSGSGGSSGSGGGSGSGSGMAVKVDKCYGTYCPCNKEL*vleyk*
iklsi


Frame B:
f*vyyyllllqplqnipvnvishmvklv*ll*kinlivwkdviplfkkfilfhviyklal
vnvqmelfsvvnqlqqqhqlpqlqqqlvkphhlvhqqpvelhhqvhqqlvelhhqvhqql
velhhlvhhqlvklhlqvhhqlvklhhlvhhqlvklhlqapklqvpkpqvhkhqvhkhrv
hnqdnkqvrnqvhnqdnkqvhnqvhnqdnnqvhnqvpkpqvkpqvklvpklvnqllqvva
vevveavevvevavvvlevvavlevvvvavqvvawqlklinamvltvhvtknfkc*sink
lnyrl


Frame C:
frfiiicccfshckiyl*m*fltw*nsfncckr*islygkm*fhysrslyysm*ftnlhl
*mykwnyfrlstnsnnninylsfnnnw*sliiwsinnr*sfiirsinnw*sfiirsinnw
*sfiiwsiinw*sfifrsiinw*sfiiwsiinw*nfifkhpnfrfpnlrftnirftnigf
tirttnrfairftirttnkftirftirttirftirypnlrsnlrsnwcpnwsincfkw*q
wk*wkqwk*wk*rw*fwkwwqfwkwww*rfr*whgs*s**mlwyllsm*qrtlsvrv*in
*iid*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF490 (VSF490Q) /CSM/VS/VSF4-D/VSF490Q.Seq.d/ 1407 0.0
VSF485 (VSF485Q) /CSM/VS/VSF4-D/VSF485Q.Seq.d/ 1336 0.0
FC-IC0773 (FC-IC0773Q) /CSM/FC-IC/FC-IC0773Q.Seq.d/ 914 0.0
FC-IC1694 (FC-IC1694Q) /CSM/FC-IC/FC-IC1694Q.Seq.d/ 912 0.0
FC-IC1629 (FC-IC1629Q) /CSM/FC-IC/FC-IC1629Q.Seq.d/ 910 0.0
FC-IC1365 (FC-IC1365Q) /CSM/FC-IC/FC-IC1365Q.Seq.d/ 910 0.0
FC-IC1339 (FC-IC1339Q) /CSM/FC-IC/FC-IC1339Q.Seq.d/ 910 0.0
FC-IC1329 (FC-IC1329Q) /CSM/FC-IC/FC-IC1329Q.Seq.d/ 910 0.0
FC-IC1036 (FC-IC1036Q) /CSM/FC-IC/FC-IC1036Q.Seq.d/ 910 0.0
FC-IC0951 (FC-IC0951Q) /CSM/FC-IC/FC-IC0951Q.Seq.d/ 910 0.0

own update 2001.11.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 40 1e-17 8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 40 8e-08 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 8e-06 15
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 42 9e-06 10
AY212268|AY212268.1 Dictyostelium discoideum component of the counting factor complex (cf45-1) gene, complete cds. 36 2e-05 3
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 3e-05 16
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 40 3e-04 7
U66523|U66523.1 Dictyostelium discoideum ORFveg113 mRNA, partial cds. 40 8e-04 3
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 0.001 11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 30 0.001 15
dna update 2004. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54PA8) RecName: Full=Uncharacterized protein DDB_G0284671; Fla... 157 6e-37
AF490764_1(AF490764|pid:none) Haliotis corrugata vitelline envel... 62 3e-08
CP001144_3485(CP001144|pid:none) Salmonella enterica subsp. ente... 56 1e-06
CP001138_3421(CP001138|pid:none) Salmonella enterica subsp. ente... 56 1e-06
AM933172_3290(AM933172|pid:none) Salmonella enterica subsp. ente... 56 1e-06
CP001127_3413(CP001127|pid:none) Salmonella enterica subsp. ente... 56 2e-06
CP001120_3534(CP001120|pid:none) Salmonella enterica subsp. ente... 55 3e-06
AF133696_1(AF133696|pid:none) Salmonella typhimurium putative su... 54 9e-06
C39200(C39200) hypothetical protein (cysG 3' region) - Salmonell... 54 9e-06
(P25927) RecName: Full=Putative surface-exposed virulence protei... 54 9e-06
protein update 2009. 3.22
PSORT

psg: 0.98 gvh: 0.83 alm: 0.51 top: 0.50 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
16.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: Golgi

>> prediction for VSF490 is exc

5' end seq. ID VSF490F
5' end seq.
>VSF490F.Seq
ATTTTAGGTTTATTATTATTTGTTGTTGCTTCAGCCACTGCAAAATATACCTGTGAATGT
AATTTCTCACATGGTGAAACTCGTTTAATTGCTGTAAAAGATAAATCTCATTGTATGGAA
AGATGTAATTCCATTATTCAAGAAGTTTATACTATTCCATGTGATTTACAAACTTGCACT
TGTAAATGTACAAATGGAACTATTTTCGGTTGTCAACCAACTCCAACAACAACATCAACT
ACCTCAGCTTCAACAACAACTGGTAAAGCCTCATCATCTGGTCCATCAACAACCGGTAGA
GCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCAGGTCCATCAACAACT
GGTAGAGCTTCATCATCTGGTCCATCATCAACTGGTAAAGCTTCATCTTCAGGTCCATCA
TCAACTGGTAAAGCTTCATCATCTGGTCCATCATCAACTGGTAAAACTTCATCTTCAAGC
ACCCAAACTTCAGGTTCCCAAACC----------
Length of 5' end seq. 504
3' end seq. ID VSF490Z
3' end seq.
>VSF490Z.Seq
----------TCAGCTTCAACAACAACTGGTAAAGCCTCATCATCTGGTCCATCAACAAC
CGGTAGAGCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCAGGTCCATC
AACAACTGGTAGAGCTTCATCATCTGGTCCATCATCAACTGGTAAAGCTTCATCTTCAGG
TCCATCATCAACTGGTAAAGCTTCATCATCTGGTCCATCATCAACTGGTAAAACTTCATC
TTCAAGCACCCAAACTTCAGGTTCCCAAACCTCAGGTTCACAAACATCAGGTTCACAAAC
ATCGGGTTCACAATCAGGACAACAAACAGGTTCGCAATCAGGTTCACAATCAGGACAACA
AACAAGTTCACAATCAGGTTCACAATCAGGACAACAATCAGGTTCACAATCAGGTACCCA
AACCTCAGGTCAAACCTCAGGTCAAACTGGTGCCCAAACTGGTCAATCAACTGCTTCAAG
TGGTAGCAGTGGAAGTAGTGGAAGCAGTGGAAGTAGTGGAAGTAGCGGTGGTAGTTCTGG
AAGTGGTGGCAGTTCTGGAAGTGGTGGTGGTAGCGGTTCAGGTAGTGGCATGGCAGTTAA
AGTTGATAAATGCTATGGTACTTACTGTCCATGTAACAAAGAACTTTAAGTGTTAGAGTA
TAAATAAATTAAATTATCGATTAA
Length of 3' end seq. 674
Connected seq. ID VSF490P
Connected seq.
>VSF490P.Seq
ATTTTAGGTTTATTATTATTTGTTGTTGCTTCAGCCACTGCAAAATATACCTGTGAATGT
AATTTCTCACATGGTGAAACTCGTTTAATTGCTGTAAAAGATAAATCTCATTGTATGGAA
AGATGTAATTCCATTATTCAAGAAGTTTATACTATTCCATGTGATTTACAAACTTGCACT
TGTAAATGTACAAATGGAACTATTTTCGGTTGTCAACCAACTCCAACAACAACATCAACT
ACCTCAGCTTCAACAACAACTGGTAAAGCCTCATCATCTGGTCCATCAACAACCGGTAGA
GCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCAGGTCCATCAACAACT
GGTAGAGCTTCATCATCTGGTCCATCATCAACTGGTAAAGCTTCATCTTCAGGTCCATCA
TCAACTGGTAAAGCTTCATCATCTGGTCCATCATCAACTGGTAAAACTTCATCTTCAAGC
ACCCAAACTTCAGGTTCCCAAACC----------TCAGCTTCAACAACAACTGGTAAAGC
CTCATCATCTGGTCCATCAACAACCGGTAGAGCTTCATCATCAGGTCCATCAACAACTGG
TAGAGCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCTGGTCCATCATC
AACTGGTAAAGCTTCATCTTCAGGTCCATCATCAACTGGTAAAGCTTCATCATCTGGTCC
ATCATCAACTGGTAAAACTTCATCTTCAAGCACCCAAACTTCAGGTTCCCAAACCTCAGG
TTCACAAACATCAGGTTCACAAACATCGGGTTCACAATCAGGACAACAAACAGGTTCGCA
ATCAGGTTCACAATCAGGACAACAAACAAGTTCACAATCAGGTTCACAATCAGGACAACA
ATCAGGTTCACAATCAGGTACCCAAACCTCAGGTCAAACCTCAGGTCAAACTGGTGCCCA
AACTGGTCAATCAACTGCTTCAAGTGGTAGCAGTGGAAGTAGTGGAAGCAGTGGAAGTAG
TGGAAGTAGCGGTGGTAGTTCTGGAAGTGGTGGCAGTTCTGGAAGTGGTGGTGGTAGCGG
TTCAGGTAGTGGCATGGCAGTTAAAGTTGATAAATGCTATGGTACTTACTGTCCATGTAA
CAAAGAACTTTAAGTGTTAGAGTATAAATAAATTAAATTATCGATTAA
Length of connected seq. 1178
Full length Seq ID VSF490E
Full length Seq.
>VSF490E.Seq
ATTTTAGGTTTATTATTATTTGTTGTTGCTTCAGCCACTGCAAAATATACCTGTGAATGT
AATTTCTCACATGGTGAAACTCGTTTAATTGCTGTAAAAGATAAATCTCATTGTATGGAA
AGATGTAATTCCATTATTCAAGAAGTTTATACTATTCCATGTGATTTACAAACTTGCACT
TGTAAATGTACAAATGGAACTATTTTCGGTTGTCAACCAACTCCAACAACAACATCAACT
ACCTCAGCTTCAACAACAACTGGTAAAGCCTCATCATCTGGTCCATCAACAACCGGTAGA
GCTTCATCATCAGGTCCATCAACAACTGGTAGAGCTTCATCATCAGGTCCATCAACAACT
GGTAGAGCTTCATCATCTGGTCCATCATCAACTGGTAAAGCTTCATCTTCAGGTCCATCA
TCAACTGGTAAAGCTTCATCATCTGGTCCATCATCAACTGGTAAAACTTCATCTTCAAGC
ACCCAAACTTCAGGTTCCCAAACCTCAGGTTCACAAACATCAGGTTCACAAACATCGGGT
TCACAATCAGGACAACAAACAGGTTCGCAATCAGGTTCACAATCAGGACAACAAACAAGT
TCACAATCAGGTTCACAATCAGGACAACAATCAGGTTCACAATCAGGTACCCAAACCTCA
GGTCAAACCTCAGGTCAAACTGGTGCCCAAACTGGTCAATCAACTGCTTCAAGTGGTAGC
AGTGGAAGTAGTGGAAGCAGTGGAAGTAGTGGAAGTAGCGGTGGTAGTTCTGGAAGTGGT
GGCAGTTCTGGAAGTGGTGGTGGTAGCGGTTCAGGTAGTGGCATGGCAGTTAAAGTTGAT
AAATGCTATGGTACTTACTGTCCATGTAACAAAGAACTTTAAGTGTTAGAGTATAAATAA
ATTAAATTATCGATTAA
Length of full length seq. 917