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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF460
Library VS
(Link to library)
Clone ID VSF460
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05614-1
Original site URL
Representative seq. ID VSF460P
(Link to Original site)
Representative DNA sequence 
>VSF460 (VSF460Q) /CSM/VS/VSF4-C/VSF460Q.Seq.d/
AAAATAAATTTAAATAATCTGTATGTAAATAAAAGAACAAATGAACAACAAATTGATAAT
AAAAAAGTAGTTGCATTGTTATTTATTGCATTTGTAATTGCAAATAGCTCTCAAGTAATG
GATACTGAAACTTTGAAAAATATCCATAAACAAATAAAGGTTGAAAAAAATCAAAAATCA
AGAAGCGAAATTAAAAATTCAAAAAAACAAATATTCTTCAACAGTAGAGTCCAATGCAAT
AAAAAAAAATAACATTTAAATATTAAATAGTTTTGGAACTTCATTTAAAAAAATAAAAAA
TATAAAAAATAAAAAAAATCTGTACATTTAAAAAACAAATAAAAAACAAAAATAATTAAA
TAAAAATAAAAAATTAAATATGTAATAAAAAAAAAAXXXXXXXXXXAAAATAAATTTAAA
TAATCATGTATGTAAATAAAAGAACAAATGAACAACAAATTGATAATAAAAAAGTAGTTG
CATTGTTATTTATTGCATTTGTAATTGCAAATAGCTCTCAAGTAATGGATACTGAAACTT
TGAAAAATATCCATAAACAAATAAAGGTTGAAAAAAATCAAAAATCAAGAAGCGAAATTA
AAAATTCAAAAAAACAAATATTCTTCAACAGTAGAGTCCAATGCAATAAAAAAAAATAAC
ATTTAAATATTAAATAGTTTTGGAACTTCATTTAAAAAAATAAAAAATATAAAAAATAAA
AAAAATCTGTACATTTAAAAAACAAATAAAAAACAAAAATAATTAAATAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
kinlnnlyvnkrtneqqidnkkvvallfiafvianssqvmdtetlknihkqikveknqks
rseiknskkqiffnsrvqcnkkk*hlnik*fwnfi*knkkykk*kksvhlknk*ktkiik
*k*KIKYVIKKK---

---KINLNNHVCK*knk*ttn***kssciviycicnck*lssngy*nfekyp*tnkg*kk
skikkrn*kfkktnilqq*spmq*kkitfky*ivlelhlkk*ki*kikkictfkkqiknk
nn*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
kinlnnlyvnkrtneqqidnkkvvallfiafvianssqvmdtetlknihkqikveknqks
rseiknskkqiffnsrvqcnkkk*hlnik*fwnfi*knkkykk*kksvhlknk*ktkiik
*k*KIKYVIKKK---

---KINLNNHVCK*knk*ttn***kssciviycicnck*lssngy*nfekyp*tnkg*kk
skikkrn*kfkktnilqq*spmq*kkitfky*ivlelhlkk*ki*kikkictfkkqiknk
nn*ik

Frame B:
k*i*iicm*ikeqmnnkliikk*lhcyllhl*lqialk*wilkl*kisink*rlkkiknq
eaklkiqknkysstvesnaikknni*ilnsfgtsfkkikniknkknlyi*ktnkkqk*ln
knkklnm**kk---

---k*i*iimyvnkrtneqqidnkkvvallfiafvianssqvmdtetlknihkqikvekn
qksrseiknskkqiffnsrvqcnkkk*hlnik*fwnfi*knkkykk*kksvhlknk*ktk
iik*

Frame C:
nkfk*svck*knk*ttn***kssciviycicnck*lssngy*nfekyp*tnkg*kkskik
krn*kfkktnilqq*spmq*kkitfky*ivlelhlkk*ki*kikkictfkkqiknknn*i
kikn*icnkkk---

---nkfk*scm*ikeqmnnkliikk*lhcyllhl*lqialk*wilkl*kisink*rlkki
knqeaklkiqknkysstvesnaikknni*ilnsfgtsfkkikniknkknlyi*ktnkkqk
*lnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF460 (VSF460Q) /CSM/VS/VSF4-C/VSF460Q.Seq.d/                        250   3e-65
VSD465 (VSD465Q) /CSM/VS/VSD4-C/VSD465Q.Seq.d/                        246   4e-64
VSJ402 (VSJ402Q) /CSM/VS/VSJ4-A/VSJ402Q.Seq.d/                        214   2e-54
SSJ787 (SSJ787Q) /CSM/SS/SSJ7-D/SSJ787Q.Seq.d/                        200   2e-50
SSK139 (SSK139Q) /CSM/SS/SSK1-B/SSK139Q.Seq.d/                         40   0.049
SLK607 (SLK607Q) /CSM/SL/SLK6-A/SLK607Q.Seq.d/                         40   0.049
SSI303 (SSI303Q) /CSM/SS/SSI3-A/SSI303Q.Seq.d/                         36   0.76
SSG173 (SSG173Q) /CSM/SS/SSG1-D/SSG173Q.Seq.d/                         36   0.76
SHJ521 (SHJ521Q) /CSM/SH/SHJ5-A/SHJ521Q.Seq.d/                         36   0.76
CHF624 (CHF624Q) /CSM/CH/CHF6-A/CHF624Q.Seq.d/                         36   0.76
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  0.023  8
AC068718|AC068718.6 Homo sapiens BAC clone RP11-123G24 from 2, complete sequence.    50  0.041  3
BX323448|BX323448.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-145B13.    44  0.11  3
AC131564|AC131564.1 Lytechinus variegatus clone Lv71J9, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  0.58  2
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    36  0.61  4
Z81083|Z81083.1 Caenorhabditis elegans cosmid F44F1.              46  0.65  1
BZ212267|BZ212267.1 CH230-280I4.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-280I4, DNA sequence.    40  0.82  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36  0.92  7
AC115623|AC115623.2 Homo sapiens BAC clone RP11-418H10 from 4, complete sequence.    38  1.1  3
X02205|X02205.1 Torulopsis glabrata mitochondrial genes for tRNAs -Tyr, -Asn, -Ala, -Ile -Trp (from Var1-LrRNA intergenic region).    32  1.1  3
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM475373_2(AM475373|pid:none) Vitis vinifera contig VV78X129863....    35   3.3
AL844509_30(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.5
protein update 2009. 3.22
PSORT -
5' end seq. ID VSF460F
5' end seq. 
>VSF460F.Seq
AAAATAAATTTAAATAATCTGTATGTAAATAAAAGAACAAATGAACAACAAATTGATAAT
AAAAAAGTAGTTGCATTGTTATTTATTGCATTTGTAATTGCAAATAGCTCTCAAGTAATG
GATACTGAAACTTTGAAAAATATCCATAAACAAATAAAGGTTGAAAAAAATCAAAAATCA
AGAAGCGAAATTAAAAATTCAAAAAAACAAATATTCTTCAACAGTAGAGTCCAATGCAAT
AAAAAAAAATAACATTTAAATATTAAATAGTTTTGGAACTTCATTTAAAAAAATAAAAAA
TATAAAAAATAAAAAAAATCTGTACATTTAAAAAACAAATAAAAAACAAAAATAATTAAA
TAAAAATAAAAAATTAAATATGTAATAAAAAAAAAA----------
Length of 5' end seq. 396
3' end seq. ID VSF460Z
3' end seq. 
>VSF460Z.Seq
----------AAAATAAATTTAAATAATCATGTATGTAAATAAAAGAACAAATGAACAAC
AAATTGATAATAAAAAAGTAGTTGCATTGTTATTTATTGCATTTGTAATTGCAAATAGCT
CTCAAGTAATGGATACTGAAACTTTGAAAAATATCCATAAACAAATAAAGGTTGAAAAAA
ATCAAAAATCAAGAAGCGAAATTAAAAATTCAAAAAAACAAATATTCTTCAACAGTAGAG
TCCAATGCAATAAAAAAAAATAACATTTAAATATTAAATAGTTTTGGAACTTCATTTAAA
AAAATAAAAAATATAAAAAATAAAAAAAATCTGTACATTTAAAAAACAAATAAAAAACAA
AAATAATTAAATAAAA
Length of 3' end seq. 366
Connected seq. ID VSF460P
Connected seq. 
>VSF460P.Seq
AAAATAAATTTAAATAATCTGTATGTAAATAAAAGAACAAATGAACAACAAATTGATAAT
AAAAAAGTAGTTGCATTGTTATTTATTGCATTTGTAATTGCAAATAGCTCTCAAGTAATG
GATACTGAAACTTTGAAAAATATCCATAAACAAATAAAGGTTGAAAAAAATCAAAAATCA
AGAAGCGAAATTAAAAATTCAAAAAAACAAATATTCTTCAACAGTAGAGTCCAATGCAAT
AAAAAAAAATAACATTTAAATATTAAATAGTTTTGGAACTTCATTTAAAAAAATAAAAAA
TATAAAAAATAAAAAAAATCTGTACATTTAAAAAACAAATAAAAAACAAAAATAATTAAA
TAAAAATAAAAAATTAAATATGTAATAAAAAAAAAA----------AAAATAAATTTAAA
TAATCATGTATGTAAATAAAAGAACAAATGAACAACAAATTGATAATAAAAAAGTAGTTG
CATTGTTATTTATTGCATTTGTAATTGCAAATAGCTCTCAAGTAATGGATACTGAAACTT
TGAAAAATATCCATAAACAAATAAAGGTTGAAAAAAATCAAAAATCAAGAAGCGAAATTA
AAAATTCAAAAAAACAAATATTCTTCAACAGTAGAGTCCAATGCAATAAAAAAAAATAAC
ATTTAAATATTAAATAGTTTTGGAACTTCATTTAAAAAAATAAAAAATATAAAAAATAAA
AAAAATCTGTACATTTAAAAAACAAATAAAAAACAAAAATAATTAAATAAAA
Length of connected seq. 762
Full length Seq ID -
Full length Seq. -
Length of full length seq. -