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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF365
Library VS
(Link to library)
Clone ID VSF365
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12019-1
Original site URL
Representative seq. ID VSF365E
(Link to Original site)
Representative DNA sequence 
>VSF365 (VSF365Q) /CSM/VS/VSF3-C/VSF365Q.Seq.d/
CGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTAGCTCATGCAGGTCG
TAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCCCATCTTACAATTCC
ATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCACCAATCCCATGGAA
TGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAAAATGTAATTGAATC
ATTCAAATCTGCAGCTGTTAGATGCATTAAAGCTGGTTTGGATTTCATTGAAATTCACGG
TGCACACGGAATACTTGATTAGTTCATTCTTATCAACAACTTCAAATAAACGTACTGATA
GCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGTTGTTAAAGCTGTCC
GTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTAGAATCTCTGCTGATGAATGTGTTA
GAGAAGCTGATGGAATAACTGAATCACCTTTGAATGGGTGGGGAATTAATGATTCAATTA
AATTGGCATCAATATTGGAACAGTATGATGTCGATTTATTGGATCCATCAAGTGGTGGTA
ATAATAAACTTCAAAATATTAAACCAGTACCACTTTATCATGTACCATACTCTAGTGCAA
TTAAAAATTCTATTAAAGAACGTTCTGGTAAATTATTGGTTTCAGCAGTTGGATTAATTG
ATAATGCTGAAAATTCAGAATCAATTTTACAATCTGGAAGTGCAGATTTGATTTTCTTGG
GTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTGAATTTGCTAAACAATTAAATTTAA
AAATTGATTATGCTCCACAATATCAACATGCAAGAAATTCATCATTACTTTATTCTAGTA
AATAAATAAATAAATAATTTATATTAACA
sequence update 2001. 3.25
Translated Amino Acid sequence 
lishmnlkqklvsn*lmqvvkhltrshi*meleipilqfhsiiqvvmvgkcmvhhqshgm
klwqyqlk*qfkilkm*LNHSNLQLLDALKLVWISLKFTVHTEYLISSFLSTTSNKRTDS
YGGSFEGRVKLLIEVVKAVRSVWTTEKPLAVRISADECVREADGITESPLNGWGINDSIK
LASILEQYDVDLLDPSSGGNNKLQNIKPVPLYHVPYSSAIKNSIKERSGKLLVSAVGLID
NAENSESILQSGSADLIFLGRPFLRNPFLPVEFAKQLNLKIDYAPQYQHARNSSLLYSSK
*ink*filt
Translated Amino Acid sequence (All Frames) 
Frame A:
r*flt*i*skswypisscrs*si*rgpifrws*kfpsynsirsskw*wlesvwcitnpme
*sygstn*ndnsry*kcn*iiqicsc*mh*swfgfh*nsrctrnt*lvhsyqqlqinvli
amvvhlrvelny**kllklsvqfgqlksh*plesllmnvleklme*lnhl*mggelmiql
nwhqywnsmmsiywihqvvviinfkilnqyhfimyhtlvqlkillknvlvnywfqqld*l
imlkiqnqfynlevqi*fswvvhsleihsyllnllnn*i*klimlhninmqeihhyfilv
nk*innly*


Frame B:
vdfshefeakvgiqlahagrkasnevpyldgarnshltipfdhpsgngwkvygaspipwn
evmavpiemtiqdienviesfksaavrcikagldfieihgahgild*filinnfk*ty**
lwwfi*g*s*iinrsc*scpfsldn*kaisr*nlc**mc*rs*wnn*itfewvgn**fn*
iginigtv*crfigsikww***tsky*tsttlsctil*cn*kfy*rtfw*iigfsswin*
*c*kfrinftiwkcrfdflgssip*ksiltc*ic*tikfkn*lcstistckkfiitlf**
ink*iiyin


Frame C:
lishmnlkqklvsn*lmqvvkhltrshi*meleipilqfhsiiqvvmvgkcmvhhqshgm
klwqyqlk*qfkilkm*LNHSNLQLLDALKLVWISLKFTVHTEYLISSFLSTTSNKRTDS
YGGSFEGRVKLLIEVVKAVRSVWTTEKPLAVRISADECVREADGITESPLNGWGINDSIK
LASILEQYDVDLLDPSSGGNNKLQNIKPVPLYHVPYSSAIKNSIKERSGKLLVSAVGLID
NAENSESILQSGSADLIFLGRPFLRNPFLPVEFAKQLNLKIDYAPQYQHARNSSLLYSSK
*ink*filt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF365 (VSF365Q) /CSM/VS/VSF3-C/VSF365Q.Seq.d/                       1842   0.0
VSD744 (VSD744Q) /CSM/VS/VSD7-B/VSD744Q.Seq.d/                       1782   0.0
VSI153 (VSI153Q) /CSM/VS/VSI1-C/VSI153Q.Seq.d/                        896   0.0
SFL110 (SFL110Q) /CSM/SF/SFL1-A/SFL110Q.Seq.d/                         50   6e-05
CFI108 (CFI108Q) /CSM/CF/CFI1-A/CFI108Q.Seq.d/                         50   6e-05
CFG462 (CFG462Q) /CSM/CF/CFG4-C/CFG462Q.Seq.d/                         50   6e-05
CFG315 (CFG315Q) /CSM/CF/CFG3-A/CFG315Q.Seq.d/                         50   6e-05
CFF271 (CFF271Q) /CSM/CF/CFF2-C/CFF271Q.Seq.d/                         50   6e-05
CFD834 (CFD834Q) /CSM/CF/CFD8-B/CFD834Q.Seq.d/                         50   6e-05
CFC790 (CFC790Q) /CSM/CF/CFC7-D/CFC790Q.Seq.d/                         50   6e-05
own update 2003. 7. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.  1209   0.0    12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42   7e-13  16
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             36   5e-09  23
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     36   5e-09  23
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    42   1e-08  18
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   3e-08  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   4e-08  15
AC073363|AC073363.10 Homo sapiens 3 BAC RP11-293N1 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48   5e-08  7
BX004991|BX004991.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222F23.    48   6e-08  2
BX927158|BX927158.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   8e-08  10
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_14(AC117072|pid:none) Dictyostelium discoideum chromoso...   384   e-163
CP000359_959(CP000359|pid:none) Deinococcus geothermalis DSM 113...   143   9e-50
CP000473_670(CP000473|pid:none) Solibacter usitatus Ellin6076, c...   140   2e-48
AM920431_636(AM920431|pid:none) Penicillium chrysogenum Wisconsi...   128   2e-45
AM270120_1(AM270120|pid:none) Aspergillus niger contig An07c0020...   129   5e-45
AY204391_2(AY204391|pid:none) Leptospirillum ferrooxidans Lfe142...   124   6e-45
AP009044_2992(AP009044|pid:none) Corynebacterium glutamicum R DN...   124   2e-44
AX066041_1(AX066041|pid:none) Sequence 385 from Patent WO0100842...   125   4e-44
BA000036_3045(BA000036|pid:none) Corynebacterium glutamicum ATCC...   125   4e-44
BX927157_83(BX927157|pid:none) Corynebacterium glutamicum ATCC 1...   125   4e-44
protein update 2009. 3.22
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VSF365 is cyt
5' end seq. ID VSF365F
5' end seq. 
>VSF365F.Seq
CGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTAGCTCATGCAGGTCG
TAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCCCATCTTACAATTCC
ATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCACCAATCCCATGGAA
TGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAAAATGTAATTGAATC
ATTCAAATCTGCAGCTGTTAGATGCATTAAAGCTGGTTTGGATTTCATTGAAATTCACGG
TGCACACGGATACTTGATTAGTTCATTCTTATCAACAACTTCAAATAAACGTACTGATAG
CTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGTTGTTAAAGCTGTCCG
TTCAGTTTGGACAACTGAAAAGCCAT----------
Length of 5' end seq. 446
3' end seq. ID VSF365Z
3' end seq. 
>VSF365Z.Seq
----------GGTGCACACGGAATACTTGATTAGTTCATTCTTATCAACAACTTCAAATA
AACGTACTGATAGCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGTTG
TTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTAGAATCTCTGCTG
ATGAATGTGTTAGAGAAGCTGATGGAATAACTGAATCACCTTTGAATGGGTGGGGAATTA
ATGATTCAATTAAATTGGCATCAATATTGGAACAGTATGATGTCGATTTATTGGATCCAT
CAAGTGGTGGTAATAATAAACTTCAAAATATTAAACCAGTACCACTTTATCATGTACCAT
ACTCTAGTGCAATTAAAAATTCTATTAAAGAACGTTCTGGTAAATTATTGGTTTCAGCAG
TTGGATTAATTGATAATGCTGAAAATTCAGAATCAATTTTACAATCTGGAAGTGCAGATT
TGATTTTCTTGGGTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTGAATTTGCTAAAC
AATTAAATTTAAAAATTGATTATGCTCCACAATATCAACATGCAAGAAATTCATCATTAC
TTTATTCTAGTAAATAAATAAATAAATAATTTATATTAACA
Length of 3' end seq. 631
Connected seq. ID VSF365P
Connected seq. 
>VSF365P.Seq
CGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTAGCTCATGCAGGTCG
TAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCCCATCTTACAATTCC
ATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCACCAATCCCATGGAA
TGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAAAATGTAATTGAATC
ATTCAAATCTGCAGCTGTTAGATGCATTAAAGCTGGTTTGGATTTCATTGAAATTCACGG
TGCACACGGATACTTGATTAGTTCATTCTTATCAACAACTTCAAATAAACGTACTGATAG
CTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGTTGTTAAAGCTGTCCG
TTCAGTTTGGACAACTGAAAAGCCAT----------GGTGCACACGGAATACTTGATTAG
TTCATTCTTATCAACAACTTCAAATAAACGTACTGATAGCTATGGTGGTTCATTTGAGGG
TAGAGTTAAATTATTAATAGAAGTTGTTAAAGCTGTCCGTTCAGTTTGGACAACTGAAAA
GCCATTAGCCGTTAGAATCTCTGCTGATGAATGTGTTAGAGAAGCTGATGGAATAACTGA
ATCACCTTTGAATGGGTGGGGAATTAATGATTCAATTAAATTGGCATCAATATTGGAACA
GTATGATGTCGATTTATTGGATCCATCAAGTGGTGGTAATAATAAACTTCAAAATATTAA
ACCAGTACCACTTTATCATGTACCATACTCTAGTGCAATTAAAAATTCTATTAAAGAACG
TTCTGGTAAATTATTGGTTTCAGCAGTTGGATTAATTGATAATGCTGAAAATTCAGAATC
AATTTTACAATCTGGAAGTGCAGATTTGATTTTCTTGGGTCGTCCATTCCTTAGAAATCC
ATTCTTACCTGTTGAATTTGCTAAACAATTAAATTTAAAAATTGATTATGCTCCACAATA
TCAACATGCAAGAAATTCATCATTACTTTATTCTAGTAAATAAATAAATAAATAATTTAT
ATTAACA
Length of connected seq. 1077
Full length Seq ID VSF365E
Full length Seq. 
>VSF365E.Seq
CGTTGATTTCTCACATGAATTTGAAGCAAAAGTTGGTATCCAATTAGCTCATGCAGGTCG
TAAAGCATCTAACGAGGTCCCATATTTAGATGGAGCTAGAAATTCCCATCTTACAATTCC
ATTCGATCATCCAAGTGGTAATGGTTGGAAAGTGTATGGTGCATCACCAATCCCATGGAA
TGAAGTTATGGCAGTACCAATTGAAATGACAATTCAAGATATTGAAAATGTAATTGAATC
ATTCAAATCTGCAGCTGTTAGATGCATTAAAGCTGGTTTGGATTTCATTGAAATTCACGG
TGCACACGGAATACTTGATTAGTTCATTCTTATCAACAACTTCAAATAAACGTACTGATA
GCTATGGTGGTTCATTTGAGGGTAGAGTTAAATTATTAATAGAAGTTGTTAAAGCTGTCC
GTTCAGTTTGGACAACTGAAAAGCCATTAGCCGTTAGAATCTCTGCTGATGAATGTGTTA
GAGAAGCTGATGGAATAACTGAATCACCTTTGAATGGGTGGGGAATTAATGATTCAATTA
AATTGGCATCAATATTGGAACAGTATGATGTCGATTTATTGGATCCATCAAGTGGTGGTA
ATAATAAACTTCAAAATATTAAACCAGTACCACTTTATCATGTACCATACTCTAGTGCAA
TTAAAAATTCTATTAAAGAACGTTCTGGTAAATTATTGGTTTCAGCAGTTGGATTAATTG
ATAATGCTGAAAATTCAGAATCAATTTTACAATCTGGAAGTGCAGATTTGATTTTCTTGG
GTCGTCCATTCCTTAGAAATCCATTCTTACCTGTTGAATTTGCTAAACAATTAAATTTAA
AAATTGATTATGCTCCACAATATCAACATGCAAGAAATTCATCATTACTTTATTCTAGTA
AATAAATAAATAAATAATTTATATTAACA
Length of full length seq. 929