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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF364
Library VS
(Link to library)
Clone ID VSF364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15444-1
Original site URL
Representative seq. ID VSF364E
(Link to Original site)
Representative DNA sequence 
>VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/
AACTAAACCGCTGCTGCCCCAAAGCTGCTCCAGCCAAAACCGCTGTTGCCACCACCAAAT
CAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTATTCAACGCCT
TATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCAAAGAGAGATT
TAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGACGTGTTTTAT
TAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACA
CCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGA
AAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTC
CAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAA
TCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCG
TCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTA
AATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTG
TCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCA
ACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTG
CTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCT
AAGCTCTTTAATAGTTTAGCGAGACNCTCACNCTTTTTTAAATAA
sequence update 2001. 3.25
Translated Amino Acid sequence 
LNRCCPKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQPKRDL
THFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKK
ARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELV
LYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFN
NNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlf*i
Translated Amino Acid sequence (All Frames) 
Frame A:
n*taaapkllqpkpllpppnqrkssrrvkrksklepystpytpktsktlvlvsvfnqrei
*lisltgqdtsnykdkdvfy*rd*rfhqqstnspvsltktplsiysny*intdqkkpqsr
kldy*kslkpvlplqkvkllqklknqsntyvsvltlspn*skrrkln*sslptmltqlns
sytyqpsadvwmshtvssnlnpd*vn*ft*etlhvlpslvstlltqtnsly*lnppnkcs
titvnterpgvvtlylvqlvls*pnvkklkpkkv*pnqrsklfnslarxsxffk*


Frame B:
tkpllpqscssqnrcchhqikesrqeg*kenqn*nliqrlihqkrqklwywfrcstkerf
nsfhslakihqitktktcfikeikgstnnqpihpcl*qkhrcpfiqiir*iqtrrslsqe
s*iienr*spcchskrsscsks*ktsptltfry*lchqinrkees*isrhcprc*ps*tr
liltnplqtygcpilyrqi*iqir*isshekrfmccphwcqlc*lkrtrfis*irqtnvq
q*q*tqkdlgw*hfiwssscylsqtsks*sqrkfsqikdlssliv*rdxhxfln


Frame C:
LNRCCPKAAPAKTAVATTKSKKVVKKGEKKIKTRTLFNALYTKNVKNFGTGFGVQPKRDL
THFTHWPRYIKLQRQRRVLLKRLKVPPTINQFTRVFDKNTAVHLFKLLDKYRPEEASVKK
ARLLKIAEARAATPKGQAAPKAEKPVQHLRFGIDSVTKLIEKKKAKLVVIAHDVDPVELV
LYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVALTGVNSADSNELALLVESAKQMFN
NNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAKSKI*al**fsetltlf*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF364 (VSF364Q) /CSM/VS/VSF3-C/VSF364Q.Seq.d/                       1742   0.0
VSJ540 (VSJ540Q) /CSM/VS/VSJ5-B/VSJ540Q.Seq.d/                       1675   0.0
VSG491 (VSG491Q) /CSM/VS/VSG4-D/VSG491Q.Seq.d/                       1647   0.0
VSI829 (VSI829Q) /CSM/VS/VSI8-B/VSI829Q.Seq.d/                       1641   0.0
VSK343 (VSK343Q) /CSM/VS/VSK3-B/VSK343Q.Seq.d/                       1540   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1479   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1427   0.0
FC-BA22 (FC-BA22Q) /CSM/FC/FC-BA/FC-BA22Q.Seq.d/                     1423   0.0
FC-IC1346 (FC-IC1346Q) /CSM/FC-IC/FC-IC1346Q.Seq.d/                  1407   0.0
FC-IC1585 (FC-IC1585Q) /CSM/FC-IC/FC-IC1585Q.Seq.d/                  1402   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.  1027   0.0    2
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54   4e-08  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54   3e-06  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56   1e-05  2
CK757727|CK757727.1 aam01-2ms4-b11 Aam01 Acorus americanus cDNA clone aam01-2ms4-b11 5', mRNA sequence.    62   1e-05  1
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60   6e-05  1
Y15171|Y15171.1 Fugu rubripes surf3 and surf6 genes and partial surf1 gene.    46   5e-04  4
AJ457342|AJ457342.1 Oryzias latipes EST, clone 631-134-12-N.       38   0.001  3
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.002  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46   0.003  2
dna update 2004. 3.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     429   e-119
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   222   1e-56
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   222   1e-56
EU934303_1(EU934303|pid:none) TSA: Anopheles darlingi AD-165 60S...   219   1e-55
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   217   4e-55
BC076693_1(BC076693|pid:none) Xenopus tropicalis hypothetical pr...   216   8e-55
BC118908_1(BC118908|pid:none) Xenopus tropicalis hypothetical pr...   216   8e-55
(Q2TBQ5) RecName: Full=60S ribosomal protein L7a;  &BC109810_1(B...   215   1e-54
(O76732) RecName: Full=60S ribosomal protein L7a;                     215   2e-54
BC052339_1(BC052339|pid:none) Mus musculus ribosomal protein L7a...   215   2e-54
protein update 2009. 3.22
PSORT 

 psg: 0.77  gvh: 0.33  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.16
 nuc: 0.12  erl: 0.00  erm: 0.60  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: cytoplasmic
	 28.0 %: mitochondrial

>> prediction for VSF364 is cyt
5' end seq. ID VSF364F
5' end seq. 
>VSF364F.Seq
AACTAAACCGCTGCTGCCCCAAAGCTGCTCCAGCCAAAACCGCTGTTGCCACCACCAAAT
CAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTATTCAACGCCT
TATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCAAAGAGAGATT
TAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGACGTGTTTTAT
TAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACA
CCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGA
AAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTC
CAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAA
TCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGAC----------
Length of 5' end seq. 527
3' end seq. ID VSF364Z
3' end seq. 
>VSF364Z.Seq
----------CATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAA
GAAAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGC
TCCAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATT
AATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACT
CGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATC
TAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGG
TGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTT
CAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCG
TGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGAT
CTAAGCTCTTTAATAGTTTAGCGAGACNCTCACNCTTTTTTAAATAA
Length of 3' end seq. 577
Connected seq. ID VSF364P
Connected seq. 
>VSF364P.Seq
AACTAAACCGCTGCTGCCCCAAAGCTGCTCCAGCCAAAACCGCTGTTGCCACCACCAAAT
CAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTATTCAACGCCT
TATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCAAAGAGAGATT
TAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGACGTGTTTTAT
TAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACA
CCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGA
AAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTC
CAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAA
TCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGAC----------CAT
TTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGAAAGCTAGATTA
TTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTCCAAAAGCTGAA
AAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAATCGAAAAGAAG
AAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCGTCTTATACTTA
CCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTAAATCCAGATTA
GGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTGTCAACTCTGCT
GACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCAACAATAACAGT
GAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTGCTATCTTAGCC
AAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCTAAGCTCTTTAA
TAGTTTAGCGAGACNCTCACNCTTTTTTAAATAA
Length of connected seq. 1104
Full length Seq ID VSF364E
Full length Seq. 
>VSF364E.Seq
AACTAAACCGCTGCTGCCCCAAAGCTGCTCCAGCCAAAACCGCTGTTGCCACCACCAAAT
CAAAGAAAGTCGTCAAGAAGGGTGAAAAGAAAATCAAAACTAGAACCTTATTCAACGCCT
TATACACCAAAAACGTCAAAAACTTTGGTACTGGTTTCGGTGTTCAACCAAAGAGAGATT
TAACTCATTTCACTCACTGGCCAAGATACATCAAATTACAAAGACAAAGACGTGTTTTAT
TAAAGAGATTAAAGGTTCCACCAACAATCAACCAATTCACCCGTGTCTTTGACAAAAACA
CCGCTGTCCATTTATTCAAATTATTAGATAAATACAGACCAGAAGAAGCCTCAGTCAAGA
AAGCTAGATTATTGAAAATCGCTGAAGCCCGTGCTGCCACTCCAAAAGGTCAAGCTGCTC
CAAAAGCTGAAAAACCAGTCCAACACTTACGTTTCGGTATTGACTCTGTCACCAAATTAA
TCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGACCCAGTTGAACTCG
TCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGTATCGTCAAATCTA
AATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTTGCCCTCACTGGTG
TCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCCAAACAAATGTTCA
ACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCTGGTCCAGCTCGTG
CTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCCAAATCAAAGATCT
AAGCTCTTTAATAGTTTAGCGAGACNCTCACNCTTTTTTAAATAA
Length of full length seq. 885