VSF358
Library VS
(Link to library)
Clone ID VSF358
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16172-1
Original site URL
Representative seq. ID VSF358E
(Link to Original site)
Representative DNA sequence
>VSF358 (VSF358Q) /CSM/VS/VSF3-C/VSF358Q.Seq.d/
CGCGTCCGATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAAC
TTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACTC
AATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAAG
CTTGGTGTTCATCAATCGTAGATACCAACCCAATACATTGTTGCTGGTTGTGAAGTTCCA
CGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGGTTACATC
ATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGC
TATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAG
AGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGA
ATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGG
CGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAGTTAAATT
CCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCAAATCGATTGTAC
TGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTACCACCAAAGGTTT
CGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAGAGCTGATTACAT
TGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAAATTGTAA
sequence update 2001. 3.25
Translated Amino Acid sequence
asdlfk**nl*nvyprfsstylkcsmsfknlnqlq*cphsi*ccfkl*kqryqyy*WFRS
LVFINRRYQPNTLLLVVKFHVLLCVLLSKVVVIMINGVTSYKIRYSLDNVTWSEYRNGAA
ITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQVGADIYTG
DNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPRNITTKGF
DCVFYTWNANKVYSLRADYIATALE*ifnliikiv


Translated Amino Acid sequence (All Frames)
Frame A:
rvrsf*iikfikclpkv*fnlsqmlnvi*epqpitmmstlnlmlf*tiktkvpillmvqk
lgvhqs*iptqyivagcevprtfmcvalqgrgdhdqwgyiiqnplfir*cylv*is*wcc
yywcn*s*hcc*sfl*ysn*ssfncyppinle*phfikm*ilhststklshsswcrylhw
r*lclkyrfr*t*sccps*ipi*icyspkgcpql*snrly*cyqsnsywcstkkhyhqrf
rlcflhlec*qslfiks*lhcycfrinf*syy*nc


Frame B:
asdlfk**nl*nvyprfsstylkcsmsfknlnqlq*cphsi*ccfkl*kqryqyy*WFRS
LVFINRRYQPNTLLLVVKFHVLLCVLLSKVVVIMINGVTSYKIRYSLDNVTWSEYRNGAA
ITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQVGADIYTG
DNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDATNQTRIGVQPRNITTKGF
DCVFYTWNANKVYSLRADYIATALE*ifnliikiv


Frame C:
rpiflnnkiykmstqglvqlisnaqchlrtstnyndvhtqfnavlnyknkgtntidgsea
wcssivdtnpihccwl*sstyfyvccsprsw*s*smglhhtksvih*imlpglnivmvll
llv*livtllliislilqlelvqllsth*pgittfh*dvnstlnqykaqslklvqiftla
itvp*ipvqvnvkllsqlnsnlnlllsqrlpstliksivlmlpiklvlvfnqetlppkvs
ivfstlgmltksih*elitllll*nkflilllkl*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF358 (VSF358Q) /CSM/VS/VSF3-C/VSF358Q.Seq.d/ 1639 0.0
VHP309 (VHP309Q) /CSM/VH/VHP3-A/VHP309Q.Seq.d/ 1592 0.0
VHB594 (VHB594Q) /CSM/VH/VHB5-D/VHB594Q.Seq.d/ 1574 0.0
VHG652 (VHG652Q) /CSM/VH/VHG6-C/VHG652Q.Seq.d/ 1562 0.0
FC-BF07 (FC-BF07Q) /CSM/FC/FC-BF/FC-BF07Q.Seq.d/ 1227 0.0
VFB223 (VFB223Q) /CSM/VF/VFB2-A/VFB223Q.Seq.d/ 1179 0.0
VHF183 (VHF183Q) /CSM/VH/VHF1-D/VHF183Q.Seq.d/ 1126 0.0
FC-BH10 (FC-BH10Q) /CSM/FC/FC-BH/FC-BH10Q.Seq.d/ 1114 0.0
VFI141 (VFI141Q) /CSM/VF/VFI1-B/VFI141Q.Seq.d/ 1076 0.0
VHM433 (VHM433Q) /CSM/VH/VHM4-B/VHM433Q.Seq.d/ 1011 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J01284|J01284.1 Slime mold (D.discoideum) discoidin-Ic gene, complete cds. 1065 0.0 3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1065 0.0 4
J01282|J01282.1 Slime mold (D.discoideum) discoidin-ia gene. 848 0.0 3
J01283|J01283.1 Slime mold (D.discoideum) discoidin-Ib gene, partial cds. 400 0.0 3
J01285|J01285.1 Slime mold (D.discoideum) discoidin-Id gene, 5' end. 385 0.0 3
J01281|J01281.1 Slime mold (D.discoideum) discoidin-i(5.6) gene, 3' end; (3' part of discoidin-ib or discoidin-id, not known which). 569 e-161 2
X00327|X00327.1 Dictyostelim discoideum discoidin I pseudogene fragment with 139 bp of discoidin I homology. 194 1e-45 1
X00326|X00326.1 Dictyostelium dicoideum discoidin I beta gene upstream region. 74 4e-09 1
X85121|X85121.1 Artificial sequences cloning vector DNA pDXD-3C. 68 2e-07 1
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 68 2e-07 1
dna update 2004. 3.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P02887) RecName: Full=Discoidin-1 subunit B/C; AltName: Full=Di... 348 e-138
J01282_1(J01282|pid:none) Slime mold (D.discoideum) discoidin-ia... 334 e-129
DLDOID(A03383) discoidin I chain D - slime mold (Dictyostelium d... 137 5e-72
AB120175_1(AB120175|pid:none) Dictyostelium discoideum DD7-1 mRN... 187 5e-70
J01281_1(J01281|pid:none) Slime mold (D.discoideum) discoidin-i(... 211 2e-53
(P42530) RecName: Full=Discoidin-2; AltName: Full=Discoidin II; ... 155 3e-51
EU304328_129(EU304328|pid:none) Ostreococcus virus OsV5, complet... 61 4e-08
AC116979_21(AC116979|pid:none) Dictyostelium discoideum chromoso... 60 1e-07
(Q95114) RecName: Full=Lactadherin; AltName: Full=Milk fat globu... 57 7e-07
(P79385) RecName: Full=Lactadherin; AltName: Full=Milk fat globu... 57 9e-07
protein update 2009. 3.22
PSORT

psg: 0.86 gvh: 0.56 alm: 0.19 top: 0.43 tms: 0.07 mit: 0.51 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.22 leu: 0.22 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
20.0 %: nuclear
16.0 %: Golgi
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
4.0 %: vacuolar

>> prediction for VSF358 is mit

5' end seq. ID VSF358F
5' end seq.
>VSF358F.Seq
CGCGTCCGATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAAC
TTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACTC
AATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAAG
CTTGGTGTTCATCAATCGTAGATACCAACCAATACATTGTTGCTGGTTGTGAAGTTCCAC
GTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGTTACATCAT
ACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCTA
TTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGAG
CTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAAT
TCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGCG
ATAACTGTGCCTTAAATACCGGTT----------
Length of 5' end seq. 564
3' end seq. ID VSF358Z
3' end seq.
>VSF358Z.Seq
----------TTCATCAATCGTAGATACCAACCCAATACATTGTTGCTGGTTGTGAAGTT
CCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGGTTAC
ATCATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGC
TGCTATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAAT
TAGAGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATG
TGAATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACAC
TGGCGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAGTTAA
ATTCCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCAAATCGATTG
TACTGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTACCACCAAAGG
TTTCGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAGAGCTGATTA
CATTGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAAATTGTAA
Length of 3' end seq. 640
Connected seq. ID VSF358P
Connected seq.
>VSF358P.Seq
CGCGTCCGATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAAC
TTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACTC
AATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAAG
CTTGGTGTTCATCAATCGTAGATACCAACCAATACATTGTTGCTGGTTGTGAAGTTCCAC
GTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGTTACATCAT
ACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCTA
TTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGAG
CTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAAT
TCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGCG
ATAACTGTGCCTTAAATACCGGTT----------TTCATCAATCGTAGATACCAACCCAA
TACATTGTTGCTGGTTGTGAAGTTCCACGTACTTTTATGTGTGTTGCTCTCCAAGGTCGT
GGTGATCATGATCAATGGGGTTACATCATACAAAATCCGTTATTCATTAGATAATGTTAC
CTGGTCTGAATATCGTAATGGTGCTGCTATTACTGGTGTAACTGATCGTAACACTGTTGT
TAATCATTTCTTTGATACTCCAATTAGAGCTCGTTCAATTGCTATCCACCCATTAACCTG
GAATAACCACATTTCATTAAGATGTGAATTCTACACTCAACCAGTACAAAGCTCAGTCAC
TCAAGTTGGTGCAGATATTTACACTGGCGATAACTGTGCCTTAAATACCGGTTCAGGTAA
ACGTGAAGTTGTTGTCCCAGTTAAATTCCAATTTGAATTTGCTACTCTCCCAAAGGTTGC
CCTCAACTTTGATCAAATCGATTGTACTGATGCTACCAATCAAACTCGTATTGGTGTTCA
ACCAAGAAACATTACCACCAAAGGTTTCGATTGTGTTTTCTACACTTGGAATGCTAACAA
AGTCTATTCATTAAGAGCTGATTACATTGCTACTGCTTTAGAATAAATTTTTAATCTTAT
TATTAAAATTGTAA
Length of connected seq. 1204
Full length Seq ID VSF358E
Full length Seq.
>VSF358E.Seq
CGCGTCCGATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAAC
TTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACTC
AATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAAG
CTTGGTGTTCATCAATCGTAGATACCAACCCAATACATTGTTGCTGGTTGTGAAGTTCCA
CGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGGTTACATC
ATACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGC
TATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAG
AGCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGA
ATTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGG
CGATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAGTTAAATT
CCAATTTGAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCAAATCGATTGTAC
TGATGCTACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTACCACCAAAGGTTT
CGATTGTGTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAGAGCTGATTACAT
TGCTACTGCTTTAGAATAAATTTTTAATCTTATTATTAAAATTGTAA
Length of full length seq. 827