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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF330
Library VS
(Link to library)
Clone ID VSF330
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15612-1
Original site URL
Representative seq. ID VSF330P
(Link to Original site)
Representative DNA sequence 
>VSF330 (VSF330Q) /CSM/VS/VSF3-B/VSF330Q.Seq.d/
CATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGT
CAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAA
CAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGT
CACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGC
TTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTA
AATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAAAAAAAAXXXXXXXXXXCATC
AATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAA
CAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAACAAA
TTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGTCACC
CTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGCTTCA
TTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTAAANG
TTTAATTAAAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
hqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepryqerstqspc
hplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLIYFKKK---

---INLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQGIKNVPHR
VRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*xfn*n
Translated Amino Acid sequence (All Frames) 
Frame A:
hqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepryqerstqspc
hplkkekrr*krn*kiihccfishrqelqrspnqksc*QLNGLIKINFLIYFKKK---

---hqspqetlrnylqg*spkscqtsqalcskdhgyqrcpy**qikqilmepryqerstq
spchplkkekrr*krn*kiihccfishrqelqrspnqksc*qlxv*lk*

Frame B:
inlhkrlygttfkdrapkavkqvklfaqkimgtkdvridnklnkflwsqgiknvphrvrv
tlsrkrnedenateklytvaslvivksfkglqtkkvadn*mv*lk*if*yilkkk---

---INLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQGIKNVPHR
VRVTLSRKRNEDENATEKLYTVASLVIVKSFKGLQTKKVADN*xfn*n

Frame C:
sistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsygakvsrtfhtesvs
psqeretkmktqlknytlllh*sssraskvskpkkllttkwfn*nkffnif*kk---

---sistrdstelpsriepqklsnksssllkrswvpkmsvlitn*tnsygakvsrtfhte
svspsqeretkmktqlknytlllh*sssraskvskpkkllttkxliki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK338 (VSK338Q) /CSM/VS/VSK3-B/VSK338Q.Seq.d/                        666   0.0
VSJ839 (VSJ839Q) /CSM/VS/VSJ8-B/VSJ839Q.Seq.d/                        666   0.0
VSJ837 (VSJ837Q) /CSM/VS/VSJ8-B/VSJ837Q.Seq.d/                        666   0.0
VSI719 (VSI719Q) /CSM/VS/VSI7-A/VSI719Q.Seq.d/                        666   0.0
VSI659 (VSI659Q) /CSM/VS/VSI6-C/VSI659Q.Seq.d/                        666   0.0
VSI504 (VSI504Q) /CSM/VS/VSI5-A/VSI504Q.Seq.d/                        666   0.0
VSG709 (VSG709Q) /CSM/VS/VSG7-A/VSG709Q.Seq.d/                        666   0.0
VSG684 (VSG684Q) /CSM/VS/VSG6-D/VSG684Q.Seq.d/                        666   0.0
VSG576 (VSG576Q) /CSM/VS/VSG5-D/VSG576Q.Seq.d/                        666   0.0
VSG544 (VSG544Q) /CSM/VS/VSG5-B/VSG544Q.Seq.d/                        666   0.0
own update 2001.11.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ293265|BZ293265.1 CG0237.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0237, DNA sequence.    46  2e-04  3
BZ294292|BZ294292.1 CG0814.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG0814, DNA sequence.    46  2e-04  3
BZ295534|BZ295534.1 CG1537.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG1537, DNA sequence.    46  2e-04  3
Z82077|Z82077.1 Caenorhabditis elegans cosmid W09C5.              44  0.022  3
AC118299|AC118299.4 Rattus norvegicus clone CH230-15I1, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42  0.041  3
AL401410|AL401410.1 T3 end of clone AS0AA027F03 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    36  0.056  2
AF275230|AF275230.1 Anoecia cornicola 12S small subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products.    44  0.085  2
BD282706|BD282706.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    48  0.14  1
AB035880|AB035880.1 Chaitoregma tattakana mitochondrial genes for small subunit rRNA, tRNA-Val, large subunit rRNA, partial and complete sequences.    48  0.14  1
BF779305|BF779305.1 3169-17 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 3169-17, mRNA sequence.    48  0.14  1
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XB5) RecName: Full=60S ribosomal protein L31;                     197   2e-49
EF062489_1(EF062489|pid:none) Artemia franciscana clone 1JM23.05...   131   2e-29
(Q7KF90) RecName: Full=60S ribosomal protein L31;  &(Q9GP16) Rec...   129   1e-28
DQ213101_1(DQ213101|pid:none) Taeniopygia guttata clone 0058P001...   128   2e-28
BT058251_1(BT058251|pid:none) Salmo salar clone Contig2813 60S r...   127   2e-28
BT046479_1(BT046479|pid:none) Salmo salar clone ssal-evd-510-200...   127   3e-28
(Q90YT7) RecName: Full=60S ribosomal protein L31;  &AF401586_1(A...   127   4e-28
AY961479_1(AY961479|pid:none) Phytophthora infestans clone MY-22...   126   6e-28
EU139229_1(EU139229|pid:none) Flustra foliacea putative 60S ribo...   126   6e-28
DQ892609_1(DQ892609|pid:none) Synthetic construct clone IMAGE:10...   125   8e-28
protein update 2009. 3.22
PSORT 

 psg: 0.78  gvh: 0.29  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.06
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VSF330 is cyt
5' end seq. ID VSF330F
5' end seq. 
>VSF330F.Seq
CATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGT
CAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAA
CAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGT
CACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGC
TTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTA
AATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAAAAAAAA----------
Length of 5' end seq. 346
3' end seq. ID VSF330Z
3' end seq. 
>VSF330Z.Seq
----------CATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCC
CAAAAGCTGTCAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCC
GTATTGATAACAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACA
GAGTCCGTGTCACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTAT
ACACTGTTGCTTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTG
CTGACAACTAAANGTTTAATTAAAATAA
Length of 3' end seq. 318
Connected seq. ID VSF330P
Connected seq. 
>VSF330P.Seq
CATCAATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGT
CAAACAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAA
CAAATTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGT
CACCCTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGC
TTCATTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTA
AATGGTTTAATTAAAATAAATTTTTTAATATATTTTAAAAAAAAAA----------CATC
AATCTCCACAAGAGACTCTACGGAACTACCTTCAAGGATAGAGCCCCAAAAGCTGTCAAA
CAAGTCAAGCTCTTTGCTCAAAAGATCATGGGTACCAAAGATGTCCGTATTGATAACAAA
TTAAACAAATTCTTATGGAGCCAAGGTATCAAGAACGTTCCACACAGAGTCCGTGTCACC
CTCTCAAGAAAGAGAAACGAAGATGAAAACGCAACTGAAAAATTATACACTGTTGCTTCA
TTAGTCATCGTCAAGAGCTTCAAAGGTCTCCAAACCAAAAAAGTTGCTGACAACTAAANG
TTTAATTAAAATAA
Length of connected seq. 664
Full length Seq ID -
Full length Seq. -
Length of full length seq. -