VSF305
Library VS
(Link to library)
Clone ID VSF305
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U06692-1
Original site URL
Representative seq. ID VSF305P
(Link to Original site)
Representative DNA sequence
>VSF305 (VSF305Q) /CSM/VS/VSF3-A/VSF305Q.Seq.d/
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTC
ATTTATTTTATTTATTTATTTTATTTTATTTATTTATTCAATTTTTAATTTTATTTAAAA
ATATGGAAGAAATTCAACCATCATCATCAAAAGAAACGGAATCTATTAATAGTAATGAAA
ATGATAATGATAATAAAATTAGTACTACACCAGTTATTTCTATATCAACATTTATAAAGA
GTAAAAAAAGTGCATCAACAAGTACATCACCACCGAAATCTGGTTCATTATTATCAATTC
AAAGAACTTTAAAAAATAGTTCAGAAACACAAATTATAAAAGAAAAAAAGTAATAATAAA
AAAAATTTTAAAAAAAAAAXXXXXXXXXXATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTCATTTATTTTATTTATTTATTTTATTTTATTT
ATTTATTCAATTTTTAATTTTATTTAAAAATATGGAAGAAATTCAACCATCATCATCAAA
AGAAACGGAATCTATTAATAGTAATGAAAATGATAATGATAATAAAATTAGTACTACACC
AGTTATTTCTATATCAACATTTATAAAGAGTAAAAAAAGTGCATCAACAAGTACATCACC
ACCGAAATCTGGTTCATTATTATCAATTCAAAGAACTTTAAAAAATAGTTCAGAAACACA
AATTAAAAAGAAAAAAAGTAATAAAAAAAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
fiylfiylfiylfiylfiysfilfiyfilfiysifnfi*kygrnstiiikrngiy****k
*****n*yytsyfyiniyke*kkcinkyitteiwfiiinsknfkk*FRNTNYKRKKVIIK
KILKKK---

---LFIYLFIYLFIYLFIYLFIHLFYLFILFYLFIQFLILFKNMEEIQPSSSKETESINS
NENDNDNKISTTPVISISTFIKSKKSASTSTSPPKSGSLLSIQRTLKNSSETQIKKKKSN
KKK


Translated Amino Acid sequence (All Frames)
Frame A:
iylfiylfiylfiylfiylfiyfiylfyfiylfnf*fylkiwkkfnhhhqkkrnllivmk
mimiiklvlhqlflyqhl*rvkkvhqqvhhhrnlvhyyqfkel*kivqkhkl*kkksnnk
knfkkk---

---iylfiylfiylfiylfiylfiyfiylfyfiylfnf*fylkiwkkfnhhhqkkrnlli
vmkmimiiklvlhqlflyqhl*rvkkvhqqvhhhrnlvhyyqfkel*kivqkhklkrkkv
ikkn

Frame B:
fiylfiylfiylfiylfiysfilfiyfilfiysifnfi*kygrnstiiikrngiy****k
*****n*yytsyfyiniyke*kkcinkyitteiwfiiinsknfkk*FRNTNYKRKKVIIK
KILKKK---

---fiylfiylfiylfiylfiysfilfiyfilfiysifnfi*kygrnstiiikrngiy**
**k*****n*yytsyfyiniyke*kkcinkyitteiwfiiinsknfkk*frntn*kekk*
*kk

Frame C:
lfiylfiylfiylfiylfihlfylfilfylfiqflilfknmeeiqpsssketesinsnen
dndnkisttpvisistfikskksaststsppksgsllsiqrtlknssetqiikekk***k
kf*kk---

---LFIYLFIYLFIYLFIYLFIHLFYLFILFYLFIQFLILFKNMEEIQPSSSKETESINS
NENDNDNKISTTPVISISTFIKSKKSASTSTSPPKSGSLLSIQRTLKNSSETQIKKKKSN
KKK

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF343 (VSF343Q) /CSM/VS/VSF3-B/VSF343Q.Seq.d/ 381 e-104
VSF305 (VSF305Q) /CSM/VS/VSF3-A/VSF305Q.Seq.d/ 381 e-104
SSE624 (SSE624Q) /CSM/SS/SSE6-A/SSE624Q.Seq.d/ 44 0.003
SSC569 (SSC569Q) /CSM/SS/SSC5-C/SSC569Q.Seq.d/ 44 0.003
SHK253 (SHK253Q) /CSM/SH/SHK2-C/SHK253Q.Seq.d/ 44 0.003
VSF441 (VSF441Q) /CSM/VS/VSF4-B/VSF441Q.Seq.d/ 42 0.012
SSA642 (SSA642Q) /CSM/SS/SSA6-B/SSA642Q.Seq.d/ 42 0.012
FCL-AD11 (FCL-AD11Q) /CSM/FCL/FCL-AD/FCL-AD11Q.Seq.d/ 42 0.012
AFM301 (AFM301Q) /CSM/AF/AFM3-A/AFM301Q.Seq.d/ 42 0.012
VSI720 (VSI720Q) /CSM/VS/VSI7-A/VSI720Q.Seq.d/ 40 0.048

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 248 2e-95 8
AZ167232|AZ167232.1 SP_0094_B2_F12_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=94 Col=24 Row=L, DNA sequence. 44 1e-06 3
T09672|T09672.1 0251m7 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 0251m, DNA sequence. 50 1e-06 2
AA550389|AA550389.1 1537m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1537m, DNA sequence. 50 4e-06 2
AL457140|AL457140.1 T. brucei sheared genomic DNA clone 72h02, forward sequence. 42 6e-06 2
BX564198|BX564198.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse70c12_p1c. 44 1e-05 2
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 40 2e-05 8
BH304722|BH304722.1 CH230-85G22.TJ CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-85G22, DNA sequence. 52 2e-04 2
BH424329|BH424329.1 BOGTW87TR BOGT Brassica oleracea genomic clone BOGTW87, DNA sequence. 40 2e-04 2
BZ426365|BZ426365.1 BONPS76TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONPS76, DNA sequence. 40 2e-04 2
dna update 2003. 8.23
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 471,991,549
protein update 2009. 3.22
PSORT

psg: 0.63 gvh: 0.51 alm: 0.20 top: -0.03 tms: 0.13 mit: 0.40 mip: 0.03
nuc: 0.08 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: cytoplasmic
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal
4.0 %: extracellular, including cell wall

>> prediction for VSF305 is end

5' end seq. ID VSF305F
5' end seq.
>VSF305F.Seq
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTC
ATTTATTTTATTTATTTATTTTATTTTATTTATTTATTCAATTTTTAATTTTATTTAAAA
ATATGGAAGAAATTCAACCATCATCATCAAAAGAAACGGAATCTATTAATAGTAATGAAA
ATGATAATGATAATAAAATTAGTACTACACCAGTTATTTCTATATCAACATTTATAAAGA
GTAAAAAAAGTGCATCAACAAGTACATCACCACCGAAATCTGGTTCATTATTATCAATTC
AAAGAACTTTAAAAAATAGTTCAGAAACACAAATTATAAAAGAAAAAAAGTAATAATAAA
AAAAATTTTAAAAAAAAAA----------
Length of 5' end seq. 379
3' end seq. ID VSF305Z
3' end seq.
>VSF305Z.Seq
----------ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTCATTTATTTTATTTATTTATTTTATTTTATTTATTTATTCAATTTTTAATT
TTATTTAAAAATATGGAAGAAATTCAACCATCATCATCAAAAGAAACGGAATCTATTAAT
AGTAATGAAAATGATAATGATAATAAAATTAGTACTACACCAGTTATTTCTATATCAACA
TTTATAAAGAGTAAAAAAAGTGCATCAACAAGTACATCACCACCGAAATCTGGTTCATTA
TTATCAATTCAAAGAACTTTAAAAAATAGTTCAGAAACACAAATTAAAAAGAAAAAAAGT
AATAAAAAAAAAT
Length of 3' end seq. 363
Connected seq. ID VSF305P
Connected seq.
>VSF305P.Seq
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTC
ATTTATTTTATTTATTTATTTTATTTTATTTATTTATTCAATTTTTAATTTTATTTAAAA
ATATGGAAGAAATTCAACCATCATCATCAAAAGAAACGGAATCTATTAATAGTAATGAAA
ATGATAATGATAATAAAATTAGTACTACACCAGTTATTTCTATATCAACATTTATAAAGA
GTAAAAAAAGTGCATCAACAAGTACATCACCACCGAAATCTGGTTCATTATTATCAATTC
AAAGAACTTTAAAAAATAGTTCAGAAACACAAATTATAAAAGAAAAAAAGTAATAATAAA
AAAAATTTTAAAAAAAAAA----------ATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATTCATTTATTTTATTTATTTATTTTATTTTATTT
ATTTATTCAATTTTTAATTTTATTTAAAAATATGGAAGAAATTCAACCATCATCATCAAA
AGAAACGGAATCTATTAATAGTAATGAAAATGATAATGATAATAAAATTAGTACTACACC
AGTTATTTCTATATCAACATTTATAAAGAGTAAAAAAAGTGCATCAACAAGTACATCACC
ACCGAAATCTGGTTCATTATTATCAATTCAAAGAACTTTAAAAAATAGTTCAGAAACACA
AATTAAAAAGAAAAAAAGTAATAAAAAAAAAT
Length of connected seq. 742
Full length Seq ID -
Full length Seq. -
Length of full length seq. -