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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSF262
Library VS
(Link to library)
Clone ID VSF262
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03807-1
Original site URL
Representative seq. ID VSF262P
(Link to Original site)
Representative DNA sequence 
>VSF262 (VSF262Q) /CSM/VS/VSF2-C/VSF262Q.Seq.d/
CAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAACTCAAAAAC
GCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGTGCTATCGCC
CCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTTTTCAAAGTT
GATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTCCCAACTTTC
ATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAAGTAGCCCTT
GAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGTAAAAAAAAAAX
XXXXXXXXXCAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAA
CTCAAAAACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCCTTGAAAATAGGTCAAAAAACTNCTTATAAATAAAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
ktkctknqktrvntklnsktlqsllfisllpgvahvvlspqfsptfqmhqktakslfskl
mlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkiwsknsyk*IIYRICKKK-
--

---QNKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENRSKNXL*in
Translated Amino Acid sequence (All Frames) 
Frame A:
qnkmykepkneseyeaelknapvavvyltatwcgpcraiapvftnisnapenskitffkv
dvdalkklpvceslqgvptfiayrngeeqerfsgankvalenmvkkll*innl*nl*kk-
--

---QNKMYKEPKNESEYEAELKNAPVAVVYLTATWCGPCRAIAPVFTNISNAPENSKITF
FKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENRSKNXL*in

Frame B:
ktkctknqktrvntklnsktlqsllfisllpgvahvvlspqfsptfqmhqktakslfskl
mlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkiwsknsyk*IIYRICKKK-
--

---ktkctknqktrvntklnsktlqsllfisllpgvahvvlspqfsptfqmhqktakslf
sklmlmplknyqfvnhskvsqlslltemvknkkdslvpik*plkigqktxyk*

Frame C:
kqnvqrtkkre*irs*tqkrssrcclshcylvwpmscyrpsfhqhfkctrkqqnhffqs*
c*cp*kitsl*itprcpnfhclqkw*rtrkilwcq*ssp*kygqktlink*siefvkkk-
--

---kqnvqrtkkre*irs*tqkrssrcclshcylvwpmscyrpsfhqhfkctrkqqnhff
qs*c*cp*kitsl*itprcpnfhclqkw*rtrkilwcq*ssp*k*vkkllink
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ701 (VSJ701Q) /CSM/VS/VSJ7-A/VSJ701Q.Seq.d/                        692   0.0
VSJ526 (VSJ526Q) /CSM/VS/VSJ5-B/VSJ526Q.Seq.d/                        692   0.0
VSG588 (VSG588Q) /CSM/VS/VSG5-D/VSG588Q.Seq.d/                        692   0.0
VSF416 (VSF416Q) /CSM/VS/VSF4-A/VSF416Q.Seq.d/                        692   0.0
VSF262 (VSF262Q) /CSM/VS/VSF2-C/VSF262Q.Seq.d/                        692   0.0
VFG868 (VFG868Q) /CSM/VF/VFG8-C/VFG868Q.Seq.d/                        692   0.0
VSB571 (VSB571Q) /CSM/VS/VSB5-C/VSB571Q.Seq.d/                        678   0.0
VSA165 (VSA165Q) /CSM/VS/VSA1-C/VSA165Q.Seq.d/                        676   0.0
VSC387 (VSC387Q) /CSM/VS/VSC3-D/VSC387Q.Seq.d/                        670   0.0
VSB708 (VSB708Q) /CSM/VS/VSB7-A/VSB708Q.Seq.d/                        662   0.0
own update 2001.11.21
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL929053|AL929053.5 Zebrafish DNA sequence from clone DKEY-21N12 in linkage group 20.    44  0.028  2
AC096242|AC096242.7 Rattus norvegicus clone CH230-34A11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    48  0.046  4
AF016951|AF016951.1 Alces alces ALCES mitochondrial D-loop, complete sequence.    36  0.068  2
BQ507669|BQ507669.2 EST615084 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 3' end, mRNA sequence.    32  0.48  3
BG598337|BG598337.1 EST497015 cSTS Solanum tuberosum cDNA clone cSTS20D12 5' sequence, mRNA sequence.    32  0.49  3
BQ507668|BQ507668.1 EST615083 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGR77 5' end, mRNA sequence.    32  0.52  3
AC016553|AC016553.6 Homo sapiens chromosome 5 clone CTC-305H11, complete sequence.    46  0.59  3
AC022090|AC022090.4 Homo sapiens chromosome 5 clone CTB-133H15, WORKING DRAFT SEQUENCE, 22 ordered pieces.    46  0.59  3
AC020979|AC020979.6 Homo sapiens chromosome 5 clone RP1_166C2, complete sequence.    46  0.59  3
AL732359|AL732359.21 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  XXyac-82D3.    46  0.59  1
dna update 2003. 8.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT057724_1(BT057724|pid:none) Salmo salar clone ssal-evf-539-015...    86   1e-15
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn...    85   2e-15
BT056618_1(BT056618|pid:none) Salmo salar clone ssal-evf-553-337...    84   3e-15
AY036906_1(AY036906|pid:none) Vitis labrusca Hsp70 interacting p...    82   1e-14
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050...    82   1e-14
BC049031_1(BC049031|pid:none) Danio rerio zgc:56493, mRNA (cDNA ...    82   2e-14
BT075547_1(BT075547|pid:none) Osmerus mordax clone omor-eva-004-...    80   6e-14
CR954217_167(CR954217|pid:none) Ostreococcus tauri strain OTTH05...    79   1e-13
AB019230_10(AB019230|pid:none) Arabidopsis thaliana genomic DNA,...    79   1e-13
(Q9DGI3) RecName: Full=Thioredoxin;          Short=Trx;  &AF2936...    78   2e-13
protein update 2009. 7.31
PSORT 

 psg: 0.42  gvh: 0.67  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal

>> prediction for VSF262 is cyt
5' end seq. ID VSF262F
5' end seq. 
>VSF262F.Seq
CAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAACTCAAAAAC
GCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGTGCTATCGCC
CCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTTTTCAAAGTT
GATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTCCCAACTTTC
ATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAAGTAGCCCTT
GAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGTAAAAAAAAAA-
---------
Length of 5' end seq. 359
3' end seq. ID VSF262Z
3' end seq. 
>VSF262Z.Seq
----------CAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGA
ACTCAAAAACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCG
TGCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTT
TTTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGT
CCCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAA
AGTAGCCCTTGAAAATAGGTCAAAAAACTNCTTATAAATAAAT
Length of 3' end seq. 333
Connected seq. ID VSF262P
Connected seq. 
>VSF262P.Seq
CAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAACTCAAAAAC
GCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGTGCTATCGCC
CCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTTTTCAAAGTT
GATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTCCCAACTTTC
ATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAAGTAGCCCTT
GAAAATATGGTCAAAAAACTCTTATAAATAAATAATCTATAGAATTTGTAAAAAAAAAA-
---------CAAAACAAAATGTACAAAGAACCAAAAAACGAGAGTGAATACGAAGCTGAA
CTCAAAAACGCTCCAGTCGCTGTTGTTTATCTCACTGCTACCTGGTGTGGCCCATGTCGT
GCTATCGCCCCAGTTTTCACCAACATTTCAAATGCACCAGAAAACAGCAAAATCACTTTT
TTCAAAGTTGATGTTGATGCCCTTAAAAAATTACCAGTTTGTGAATCACTCCAAGGTGTC
CCAACTTTCATTGCTTACAGAAATGGTGAAGAACAAGAAAGATTCTCTGGTGCCAATAAA
GTAGCCCTTGAAAATAGGTCAAAAAACTNCTTATAAATAAAT
Length of connected seq. 692
Full length Seq ID -
Full length Seq. -
Length of full length seq. -