VSF260
Library VS
(Link to library)
Clone ID VSF260
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U02213-1|Contig-U16357-1
Original site URL
Representative seq. ID VSF260P
(Link to Original site)
Representative DNA sequence
>VSF260 (VSF260Q) /CSM/VS/VSF2-C/VSF260Q.Seq.d/
GAACTTGGCAATTCAAATCCAACATCACCTGCGCTACATTCTTCTTCTTCATCATCTTCT
ATAACTTCCACTTCTTCATCCACTTCTTCATCCACTTCTTCAATATCATCATCATCTTCT
TCATCATCTTCTTCAAAAACCTCATCTCCAAATTCAAAAGGATTAATTCAACAAATTAAT
TCATTAATGAATAAAAAGAAACCTTTATTACAATCAATTCAAAATTCAATTCAAGTTTCA
AATATTGAAAGAAGTTCAACTTGGTGTTTAGATTTAGTTGAAAATAAATTAAATTTATCA
TCATCATCATCATCATCATCATCTCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATAANAATAATAAT
AATAATAATATAAGTGCGCCAAATXXXXXXXXXXATCGAGACATGCCCACAGTTTTCGAT
GGTCAACGTTATATCTATATCGTTGGTGGTAAGGATCAAACTTGGTTCTCTAATCAAATC
GATCGTTTTGATATTCTCACTCAAGAGTATCAAAGTCTAAAGAAAATGAAAGTACCAAGA
TCCGATCTATCAGCTATCTATGATCCACGTAAATGGTGGCTCTATTTATGCTATTGGTGG
TTTCAATGGAAAAGCTTTGGATATCATTGAACAATATGATATTCAATCCGATAAATGGGT
AAAGGTTGGTAAAATGAGAAAACAACGTGATGGACCTGGTGCTGTTTACGATGGAAATAA
TCATATCTACGTTATGGGTGGTAGTTTTGGTGGTAGAAAAATTTCAAATAACCTAGAACG
TATGAATATTGAAACTTGGGAATGGGAAAGTCTTTCCGATATGAAAAAGCCAATAGATGT
TCGCAATTCTGCAATCTTTGATGGTACTGGTAATATCTATGTCATTGGTGGTTACTTTTC
TGAGGTTTTAGCTGAAAATCAATGTTATAATATTGAAAAGAATGAATGGAATTATTTAGA
ACCAATGATTGAACCACGTGAAGGTAATGCTTTAACTTATGTTGAATTTCAAGTTTAAAA
ATTTCAAAAAAAAATAATAATAATAATTA
sequence update 2001. 3.22
Translated Amino Acid sequence
ELGNSNPTSPALHSSSSSSSITSTSSSTSSSTSSISSSSSSSSSSKTSSPNSKGLIQQIN
SLMNKKKPLLQSIQNSIQVSNIERSSTWCLDLVENKLNLSSSSSSSSSQQQQQQQQQQQQ
QQQQQQQQQQQQQQQNXNNNNNNISAPN---

---RDMPTVFDGQRYIYIVGGKDQTWFSNQIDRFDILTQEYQSLKKMKVPRSDLSAIYDP
RKWWLYLCYWWFQWKSFGYH*ti*ysir*mgkgw*nektt*wtwcclrwk*sylrygw*f
ww*knfk*prtyey*nlgmgksfryekanrcsqfcnl*wyw*ylchwwllf*gfs*ksml
*y*ke*melfrtnd*tt*r*cfnlc*isslkiskknnnnn


Translated Amino Acid sequence (All Frames)
Frame A:
ELGNSNPTSPALHSSSSSSSITSTSSSTSSSTSSISSSSSSSSSSKTSSPNSKGLIQQIN
SLMNKKKPLLQSIQNSIQVSNIERSSTWCLDLVENKLNLSSSSSSSSSQQQQQQQQQQQQ
QQQQQQQQQQQQQQQNXNNNNNNISAPN---

---ietcpqfsmvnvisislvvriklgsliksivlifslksikv*rk*kyqdpiyqlsmi
hvnggsiyaiggfngkaldiieqydiqsdkwvkvgkmrkqrdgpgavydgnnhiyvmggs
fggrkisnnlermnietweweslsdmkkpidvrnsaifdgtgniyviggyfsevlaenqc
ynieknewnylepmiepregnaltyvefqv*kfqkkiiiii

Frame B:
nlaiqiqhhlryilllhhll*lpllhpllhpllqyhhhllhhllqkphlqiqkd*fnkli
h**ikrnlyynqfkiqfkfqilkevqlgv*i*lkin*iyhhhhhhhhlnnnnnnnnnnnn
nnnnnnnnnnnnnnkixiiiiii*vrq---

---srhahsfrwstlylyrww*gsnlvl*snrsf*yshsrvskskenestkirsisyl*s
t*mvalfmllvvsmeklwislnnmifnping*rlvk*ennvmdlvlftmeiiistlwvvv
lvvekfqit*nv*ilklgngkvfpi*ksq*mfailqslmvlvismslvvtflrf*lkinv
iilkrmngii*nq*lnhvkvml*lmlnfkfknfkkk****l

Frame C:
twqfksnitcatffffiifynfhffihffihffniiiiffiiffknliskfkrinstn*f
ine*ketfitinskfnssfky*kkfnlvfrfs*k*ikfiiiiiiiiistttttttttttt
ttttttttttttttk*x*****ykcak---

---RDMPTVFDGQRYIYIVGGKDQTWFSNQIDRFDILTQEYQSLKKMKVPRSDLSAIYDP
RKWWLYLCYWWFQWKSFGYH*ti*ysir*mgkgw*nektt*wtwcclrwk*sylrygw*f
ww*knfk*prtyey*nlgmgksfryekanrcsqfcnl*wyw*ylchwwllf*gfs*ksml
*y*ke*melfrtnd*tt*r*cfnlc*isslkiskknnnnn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF260 (VSF260Q) /CSM/VS/VSF2-C/VSF260Q.Seq.d/ 1251 0.0
VSK448 (VSK448Q) /CSM/VS/VSK4-B/VSK448Q.Seq.d/ 1080 0.0
SSG117 (SSG117Q) /CSM/SS/SSG1-A/SSG117Q.Seq.d/ 44 0.005
SSG110 (SSG110Q) /CSM/SS/SSG1-A/SSG110Q.Seq.d/ 44 0.005
VHA572 (VHA572Q) /CSM/VH/VHA5-C/VHA572Q.Seq.d/ 42 0.018
SSC105 (SSC105Q) /CSM/SS/SSC1-A/SSC105Q.Seq.d/ 42 0.018
SFC756 (SFC756Q) /CSM/SF/SFC7-C/SFC756Q.Seq.d/ 42 0.018
VSJ836 (VSJ836Q) /CSM/VS/VSJ8-B/VSJ836Q.Seq.d/ 38 0.28
VHO885 (VHO885Q) /CSM/VH/VHO8-D/VHO885Q.Seq.d/ 38 0.28
VHK443 (VHK443Q) /CSM/VH/VHK4-B/VHK443Q.Seq.d/ 38 0.28

own update 2003. 1. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF111942|AF111942.1 Dictyostelium discoideum AX4 development protein DG1106 (DG1106) gene, partial cds. 900 0.0 6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 900 0.0 5
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 0.031 7
AC133231|AC133231.3 Rattus norvegicus clone CH230-390K9, WORKING DRAFT SEQUENCE, 4 unordered pieces. 54 0.075 3
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence. 36 0.087 5
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 38 0.097 6
AC137420|AC137420.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 54 0.11 2
AC118851|AC118851.4 Rattus norvegicus clone CH230-403B10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 54 0.14 5
AC091550|AC091550.1 Homo sapiens chromosome 18 clone RP11-407C18 map 18, LOW-PASS SEQUENCE SAMPLING. 48 0.24 1
AC018522|AC018522.7 Homo sapiens chromosome 18 clone RP11-7N19 map 18, *** SEQUENCING IN PROGRESS ***, 1 unordered pieces. 46 0.94 1
dna update 2003. 8.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC024572_1(BC024572|pid:none) Mus musculus kelch-like 2, Mayven ... 77 1e-12
(Q8JZP3) RecName: Full=Kelch-like protein 2; &BC031142_1(BC0311... 77 1e-12
AB209727_1(AB209727|pid:none) Homo sapiens mRNA for Kelch-like p... 77 1e-12
AK294336_1(AK294336|pid:none) Homo sapiens cDNA FLJ60241 complet... 77 1e-12
AK032116_1(AK032116|pid:none) Mus musculus adult male medulla ob... 77 1e-12
(O95198) RecName: Full=Kelch-like protein 2; AltName: Full=Actin... 77 1e-12
AJ720145_1(AJ720145|pid:none) Gallus gallus mRNA for hypothetica... 68 4e-12
AJ844466_1(AJ844466|pid:none) Homo sapiens partial mRNA for KLEI... 68 4e-12
AB026190_1(AB026190|pid:none) Homo sapiens mRNA for Kelch motif ... 68 4e-12
(Q08DK3) RecName: Full=Kelch-like protein 20; &(Q8VCK5) RecName... 68 4e-12
protein update 2009. 7.31
PSORT

psg: 0.75 gvh: 0.53 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.67 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: mitochondrial
12.0 %: cytoplasmic
12.0 %: nuclear

>> prediction for VSF260 is mit

5' end seq. ID VSF260F
5' end seq.
>VSF260F.Seq
GAACTTGGCAATTCAAATCCAACATCACCTGCGCTACATTCTTCTTCTTCATCATCTTCT
ATAACTTCCACTTCTTCATCCACTTCTTCATCCACTTCTTCAATATCATCATCATCTTCT
TCATCATCTTCTTCAAAAACCTCATCTCCAAATTCAAAAGGATTAATTCAACAAATTAAT
TCATTAATGAATAAAAAGAAACCTTTATTACAATCAATTCAAAATTCAATTCAAGTTTCA
AATATTGAAAGAAGTTCAACTTGGTGTTTAGATTTAGTTGAAAATAAATTAAATTTATCA
TCATCATCATCATCATCATCATCTCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATAANAATAATAAT
AATAATAATATAAGTGCGCCAAAT----------
Length of 5' end seq. 444
3' end seq. ID VSF260Z
3' end seq.
>VSF260Z.Seq
----------ATCGAGACATGCCCACAGTTTTCGATGGTCAACGTTATATCTATATCGTT
GGTGGTAAGGATCAAACTTGGTTCTCTAATCAAATCGATCGTTTTGATATTCTCACTCAA
GAGTATCAAAGTCTAAAGAAAATGAAAGTACCAAGATCCGATCTATCAGCTATCTATGAT
CCACGTAAATGGTGGCTCTATTTATGCTATTGGTGGTTTCAATGGAAAAGCTTTGGATAT
CATTGAACAATATGATATTCAATCCGATAAATGGGTAAAGGTTGGTAAAATGAGAAAACA
ACGTGATGGACCTGGTGCTGTTTACGATGGAAATAATCATATCTACGTTATGGGTGGTAG
TTTTGGTGGTAGAAAAATTTCAAATAACCTAGAACGTATGAATATTGAAACTTGGGAATG
GGAAAGTCTTTCCGATATGAAAAAGCCAATAGATGTTCGCAATTCTGCAATCTTTGATGG
TACTGGTAATATCTATGTCATTGGTGGTTACTTTTCTGAGGTTTTAGCTGAAAATCAATG
TTATAATATTGAAAAGAATGAATGGAATTATTTAGAACCAATGATTGAACCACGTGAAGG
TAATGCTTTAACTTATGTTGAATTTCAAGTTTAAAAATTTCAAAAAAAAATAATAATAAT
AATTA
Length of 3' end seq. 655
Connected seq. ID VSF260P
Connected seq.
>VSF260P.Seq
GAACTTGGCAATTCAAATCCAACATCACCTGCGCTACATTCTTCTTCTTCATCATCTTCT
ATAACTTCCACTTCTTCATCCACTTCTTCATCCACTTCTTCAATATCATCATCATCTTCT
TCATCATCTTCTTCAAAAACCTCATCTCCAAATTCAAAAGGATTAATTCAACAAATTAAT
TCATTAATGAATAAAAAGAAACCTTTATTACAATCAATTCAAAATTCAATTCAAGTTTCA
AATATTGAAAGAAGTTCAACTTGGTGTTTAGATTTAGTTGAAAATAAATTAAATTTATCA
TCATCATCATCATCATCATCATCTCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAATAANAATAATAAT
AATAATAATATAAGTGCGCCAAAT----------ATCGAGACATGCCCACAGTTTTCGAT
GGTCAACGTTATATCTATATCGTTGGTGGTAAGGATCAAACTTGGTTCTCTAATCAAATC
GATCGTTTTGATATTCTCACTCAAGAGTATCAAAGTCTAAAGAAAATGAAAGTACCAAGA
TCCGATCTATCAGCTATCTATGATCCACGTAAATGGTGGCTCTATTTATGCTATTGGTGG
TTTCAATGGAAAAGCTTTGGATATCATTGAACAATATGATATTCAATCCGATAAATGGGT
AAAGGTTGGTAAAATGAGAAAACAACGTGATGGACCTGGTGCTGTTTACGATGGAAATAA
TCATATCTACGTTATGGGTGGTAGTTTTGGTGGTAGAAAAATTTCAAATAACCTAGAACG
TATGAATATTGAAACTTGGGAATGGGAAAGTCTTTCCGATATGAAAAAGCCAATAGATGT
TCGCAATTCTGCAATCTTTGATGGTACTGGTAATATCTATGTCATTGGTGGTTACTTTTC
TGAGGTTTTAGCTGAAAATCAATGTTATAATATTGAAAAGAATGAATGGAATTATTTAGA
ACCAATGATTGAACCACGTGAAGGTAATGCTTTAACTTATGTTGAATTTCAAGTTTAAAA
ATTTCAAAAAAAAATAATAATAATAATTA
Length of connected seq. 1099
Full length Seq ID -
Full length Seq. -
Length of full length seq. -